View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20599_high_7 (Length: 243)
Name: NF20599_high_7
Description: NF20599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20599_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 38306058 - 38306294
Alignment:
| Q |
1 |
aaactagttagtggtgacgtgtctaaaattagagagagcatcttgtttgtgagggattcaaagagtagaaggaaaaaatttaaggagtgcattgaaaagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
38306058 |
aaactagttagtggtgacgtgtctaaaattagagagagcatcttgtttgtgagggattcaaagagtagaaggaaaaaatttaaggagtgcgttgaaaagg |
38306157 |
T |
|
| Q |
101 |
ttggtggtattgacagttcagttcgcttgcatatggacatgtctatgactgtgaactcaacttatttgatgctcgatagtgctcttaaatatcaacatgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38306158 |
ttggtggtattgacagttcagttcgcttgcatatggacatgtctatgactgtgaactcaacttatttgatgctcgatagtgctcttaaatatcaacatgt |
38306257 |
T |
|
| Q |
201 |
gtttgaaagttttcacttgtatgatggtgatgatgtc |
237 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||| |
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| T |
38306258 |
gtttgaaagttttcacttgtatgatggtgattatgtc |
38306294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 38320884 - 38321109
Alignment:
| Q |
1 |
aaactagttagtggtgacgtgtctaaaattagagagagcatcttgtttgtgagggattcaaagagtagaaggaaaaaatttaaggagtgcattgaaaagg |
100 |
Q |
| |
|
||||||||||||| || ||||| ||||||||| |||||||||||||| | ||||||||||||||| ||||| ||||||||||||||||| ||||||||| |
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| T |
38320884 |
aaactagttagtgatgctgtgtcgaaaattagacagagcatcttgttttttagggattcaaagagtcgaaggcaaaaatttaaggagtgcgttgaaaagg |
38320983 |
T |
|
| Q |
101 |
ttggtggtattgacagttcagttcgcttgcatatggacatgtctatgactgtgaactcaacttatttgatgctcgatagtgctcttaaatatcaacatgt |
200 |
Q |
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|
|||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||| |
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| T |
38320984 |
ttggtggtgttgatagttcagttcgcttgcatctggacatgtctatgactgtgaactcaacttatttgatgcttgaaagtgctcttaaatataggtgtgt |
38321083 |
T |
|
| Q |
201 |
gtttgaaagttttcacttgtatgatg |
226 |
Q |
| |
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|||||||||| ||||||||||||||| |
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| T |
38321084 |
gtttgaaagtcttcacttgtatgatg |
38321109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 38325634 - 38325857
Alignment:
| Q |
1 |
aaactagttagtggtgacgtgtctaaaattagagagagcatcttgtttgtgagggattcaaagagtagaaggaaaaaatttaaggagtgcattgaaaagg |
100 |
Q |
| |
|
||||||||||||| || |||||| |||||||||||||||||| ||||||||||| ||||||||||||||||| | ||||||||||| ||||||||||||| |
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| T |
38325634 |
aaactagttagtgatgccgtgtcaaaaattagagagagcatcatgtttgtgaggcattcaaagagtagaagggagaaatttaaggaatgcattgaaaagg |
38325733 |
T |
|
| Q |
101 |
ttggtggtattgacagttcagttcgcttgcatatggacatgtctatgactgtgaactcaacttatttgatgctcgatagtgctcttaaatatcaacatgt |
200 |
Q |
| |
|
|||||||| | || ||||| |||||||||||| |||| |||||||| | |||||||||||||||||||||| || |||||||||||||||| | ||| |
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| T |
38325734 |
ttggtggtgtcgatagttccgttcgcttgcatcaggactcgtctatgagtctgaactcaacttatttgatgcttgaaagtgctcttaaatatcggcgtgt |
38325833 |
T |
|
| Q |
201 |
gtttgaaagttttcacttgtatga |
224 |
Q |
| |
|
|||||||||| ||||||||||||| |
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|
| T |
38325834 |
gtttgaaagtcttcacttgtatga |
38325857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 38316789 - 38317014
Alignment:
| Q |
1 |
aaactagttagtggtgacgtgtctaaaattagagagagcatcttgtttgtgagggattcaaagagtagaaggaaaaaatttaaggagtgcattgaaaagg |
100 |
Q |
| |
|
|||||||||||||||| ||||| | |||| |||| |||||| ||||||||||| ||||||| | |||||||| |||||||||||||||||||||||||| |
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|
| T |
38316789 |
aaactagttagtggtgccgtgtatggaattcgagacagcatcatgtttgtgaggaattcaaaaaatagaaggacaaaatttaaggagtgcattgaaaagg |
38316888 |
T |
|
| Q |
101 |
ttggtggtattgacagttcagttcgcttgcatatggacatgtctatgactgtgaactcaacttatttgatgctcgatagtgctcttaaatatcaacatgt |
200 |
Q |
| |
|
|||||||| |||| ||||| ||| || ||||| ||||||||||||||| | |||||||||||||| ||||||| || |||||||||||||||| ||||| |
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| T |
38316889 |
ttggtggtgttgatagttctgtttgcctgcatctggacatgtctatgagtctgaactcaacttatgtgatgcttgaaagtgctcttaaatatcggcatgt |
38316988 |
T |
|
| Q |
201 |
gtttgaaagttttcacttgtatgatg |
226 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
38316989 |
atttgaaagttttcacttgtatgatg |
38317014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 38308786 - 38309009
Alignment:
| Q |
1 |
aaactagttagtggtgacgtgtctaaaattagagagagcatcttgtttgtgagggattcaaagagtagaaggaaaaaatttaaggagtgcattgaaaagg |
100 |
Q |
| |
|
|||||||||||||||| ||||| ||| |||||| |||||||| ||||||||||| ||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
38308786 |
aaactagttagtggtgccgtgtataagattagaaagagcatcatgtttgtgaggcgatcaaagagtcacagggaaaaatttaaggagtgcattgaaaagg |
38308885 |
T |
|
| Q |
101 |
ttggtggtattgacagttcagttcgcttgcatatggacatgtctatgactgtgaactcaacttatttgatgctcgatagtgctcttaaatatcaacatgt |
200 |
Q |
| |
|
|||||||| |||| ||||| ||||| |||||| | ||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||| | || |
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|
| T |
38308886 |
ttggtggtgttgatagttctgttcgtttgcatctagacatgtctatgagagtgaactcaacttatttgatgcttcaaagtgctcttaaatatcagcttgc |
38308985 |
T |
|
| Q |
201 |
gtttgaaagttttcacttgtatga |
224 |
Q |
| |
|
||||||||| ||||||||||||| |
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| T |
38308986 |
atttgaaagtcttcacttgtatga |
38309009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 38300139 - 38300364
Alignment:
| Q |
1 |
aaactagttagtggtgacgtgtctaaaattagagagagcatcttgtttgtgagggattcaaagagtagaaggaaaaaatttaaggagtgcattgaaaagg |
100 |
Q |
| |
|
||||||||||| | || | ||| |||||||||||| |||||| ||||||||||| ||||||||||| ||||| |||||||||||||||| |||| ||||| |
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|
| T |
38300139 |
aaactagttagggatgtcctgtgtaaaattagagatagcatcatgtttgtgaggcattcaaagagtggaagggaaaaatttaaggagtgtattgcaaagg |
38300238 |
T |
|
| Q |
101 |
ttggtggtattgacagttcagttcgcttgcatatggacatgtctatgactgtgaactcaacttatttgatgctcgatagtgctcttaaatatcaacatgt |
200 |
Q |
| |
|
|||||||| |||| |||| |||||||||||| |||||| | ||| | |||||||||||||||| ||||| || |||||||||||||||| | ||| |
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|
| T |
38300239 |
ttggtggtgttgattgttccgttcgcttgcatctggacacgcctaaaagagtgaactcaacttattcaatgcttgaaagtgctcttaaatatcggcgtgt |
38300338 |
T |
|
| Q |
201 |
gtttgaaagttttcacttgtatgatg |
226 |
Q |
| |
|
|||||||||| ||||||||||||||| |
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|
| T |
38300339 |
gtttgaaagtcttcacttgtatgatg |
38300364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 31 - 231
Target Start/End: Original strand, 38313410 - 38313610
Alignment:
| Q |
31 |
agagagagcatcttgtttgtgagggattcaaagagtagaaggaaaaaatttaaggagtgcattgaaaaggttggtggtattgacagttcagttcgcttgc |
130 |
Q |
| |
|
||||||||||| |||||||| ||| |||| ||||||||| ||||| |||||||||||| ||||||||||||||||| |||| ||||| |||||||||| |
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|
| T |
38313410 |
agagagagcattttgtttgtaaggcattccaagagtagatggaaattttttaaggagtgcgttgaaaaggttggtggtgttgatagttcggttcgcttgc |
38313509 |
T |
|
| Q |
131 |
atatggacatgtctatgactgtgaactcaacttatttgatgctcgatagtgctcttaaatatcaacatgtgtttgaaagttttcacttgtatgatggtga |
230 |
Q |
| |
|
|| | || |||||||||| ||||||||||||||||||||||| | ||||||||||||||||| | || |||||||||| ||||||||||||||| ||| |
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|
| T |
38313510 |
atctagatatgtctatgagagtgaactcaacttatttgatgcttcaaagtgctcttaaatatcagcgtgcgtttgaaagtcttcacttgtatgatgatga |
38313609 |
T |
|
| Q |
231 |
t |
231 |
Q |
| |
|
| |
|
|
| T |
38313610 |
t |
38313610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 31 - 226
Target Start/End: Complemental strand, 38850526 - 38850331
Alignment:
| Q |
31 |
agagagagcatcttgtttgtgagggattcaaagagtagaaggaaaaaatttaaggagtgcattgaaaaggttggtggtattgacagttcagttcgcttgc |
130 |
Q |
| |
|
|||||||| ||| ||||||||||| ||||||||||||| ||| ||||||||||||||||| ||||||||||||||||| |||| ||||| |||| ||| | |
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| T |
38850526 |
agagagagtatcatgtttgtgaggcattcaaagagtaggagggaaaaatttaaggagtgctttgaaaaggttggtggtgttgatagttcggttcacttac |
38850427 |
T |
|
| Q |
131 |
atatggacatgtctatgactgtgaactcaacttatttgatgctcgatagtgctcttaaatatcaacatgtgtttgaaagttttcacttgtatgatg |
226 |
Q |
| |
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|| |||| || ||||||| | ||| ||||||||| || |||| || || ||||||||||| | || |||||||||||||||||||||||||| |
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|
| T |
38850426 |
atttggatatatctatgagtttgagttcaacttatatgttgcttgaaagagctcttaaataccggtgtgcgtttgaaagttttcacttgtatgatg |
38850331 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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