View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20599_low_1 (Length: 499)
Name: NF20599_low_1
Description: NF20599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20599_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 34444490 - 34444140
Alignment:
| Q |
1 |
tagaacatgaaaagatgagccatcatcaaatgagatgccttagaaaaggttggtatcatt-agcaataattgaagggaaacaattgcaccacaatgccaa |
99 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
34444490 |
tagaacatgaaaagatgagccatcatcaaatgaaatgccttagaaaaggttggtatcatttagcaataattgaagggaaacaattgcaccacaatgccaa |
34444391 |
T |
|
| Q |
100 |
cacaaaagctaccacatggatgtttggaagaaatcacggtcactccataattttgttgaagttttaaagtgtaatttttatcaaaattagagtgacac-- |
197 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34444390 |
cacaaaagctaccacatggatgtttggaagaaatcatggtcactccataattttgttgaagttttaaagtgtaatttttatcaaaattagagtgacacac |
34444291 |
T |
|
| Q |
198 |
tctgattacgctgaagtaattgtgaatccaaactgtggagaatgtgattttcttaaaaatgtatgttgctaaaagaatcacaatagtacctccattttct |
297 |
Q |
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||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34444290 |
tctgattacgctgaactaattgtgaatccaaacttttgagaatgtgattttcttaaaaatgtatgttgctaaaagaatcacaatagtacctccattttct |
34444191 |
T |
|
| Q |
298 |
tcatttccatttcagcttttcttatctgatgattttcccaggcttgaatct |
348 |
Q |
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| T |
34444190 |
tcatttccatttcagcttttcttatctgatgattttcccaggcttgaatct |
34444140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 343 - 481
Target Start/End: Original strand, 34444786 - 34444924
Alignment:
| Q |
343 |
gaatctagcccaagcaacagacatgcgttgctttcatgagttggcattggcaccaggtgctcaatttaatgagtactagtagtttctttacattacctac |
442 |
Q |
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| T |
34444786 |
gaatctagcccaagcaacagacatgcgttgctttcatgagttggcagtggcaccaggtgctcaatttaatgagtactagtagtttctttacattacctac |
34444885 |
T |
|
| Q |
443 |
aatcgtaccagcatagatgaagcattgacacggatgccc |
481 |
Q |
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| T |
34444886 |
aatcgtactagcatagatgaagcattgacacggatgccc |
34444924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 343 - 417
Target Start/End: Original strand, 4456962 - 4457030
Alignment:
| Q |
343 |
gaatctagcccaagcaacagacatgcgttgctttcatgagttggcattggcaccaggtgctcaatttaatgagta |
417 |
Q |
| |
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| T |
4456962 |
gaatctagcctaagcaacagtcatgcgttgctttcatgag------ttggcaccaggtgctcaatttaatgagta |
4457030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 6019598 - 6019646
Alignment:
| Q |
149 |
attttgttgaagttttaaagtgtaatttttatcaaaattagagtgacac |
197 |
Q |
| |
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|
| T |
6019598 |
attttgttgaagttataaagtgtagtttttgtcaaaattatggtgacac |
6019646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 188
Target Start/End: Complemental strand, 5084094 - 5084055
Alignment:
| Q |
149 |
attttgttgaagttttaaagtgtaatttttatcaaaatta |
188 |
Q |
| |
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| T |
5084094 |
attttgttgaaattttaaagtgtaaattttatcaaaatta |
5084055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 149 - 193
Target Start/End: Original strand, 16067532 - 16067576
Alignment:
| Q |
149 |
attttgttgaagttttaaagtgtaatttttatcaaaattagagtg |
193 |
Q |
| |
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|||||||||| | ||||||||||| ||||||||||||||| |||| |
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| T |
16067532 |
attttgttgatgctttaaagtgtagtttttatcaaaattacagtg |
16067576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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