View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20599_low_3 (Length: 403)
Name: NF20599_low_3
Description: NF20599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20599_low_3 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 22 - 403
Target Start/End: Original strand, 25064758 - 25065139
Alignment:
| Q |
22 |
attttgatgattttcgtgtatttagtagagagttcgatgattagaataaattaattagatgggagagaatgattgttcaaaatacatagagagaaagtta |
121 |
Q |
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| T |
25064758 |
attttgatgatttttgtgtatttagtagggagttcgatgattaaaataaattaattagatgggagagaatgattgttcaaaatagatagagagaaagtta |
25064857 |
T |
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| Q |
122 |
ccaaagagagagaattgaaaggtagataatctgcatcccataacttatgagttgaaataattttctctatcttctcaatgttatgatcagatggtgtatt |
221 |
Q |
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| T |
25064858 |
ccaaagagagagaattgaaaggtagataatctgcatcccataacttatgagttgaaataattttctctatcttctcaatgttatgatcagatggtgtatt |
25064957 |
T |
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| Q |
222 |
gttttgaagagaagcactgcatcagttcaaggaagataaatggattaatcattaacatactcaaggcactgaaaaggtatcagatgtgtaaactaatggt |
321 |
Q |
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| T |
25064958 |
gttttgaagagaagcactgcatcagttcaaggaagataaatggattaatcattaacatactcaaggcactgaaaaggtatcagatgtgtaaactaatggt |
25065057 |
T |
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| Q |
322 |
gtagcaannnnnnngacataagaatgtgttcttggaggtgtgttcacgaggaggatccaagaatcatgcaatcgagtaggtt |
403 |
Q |
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| T |
25065058 |
gtagcaatttttttgacataagaatgtgttcttggaggtgtgttcacgaggaggatccaagaatcatgcaatcgagtaggtt |
25065139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 22 - 226
Target Start/End: Original strand, 25086194 - 25086398
Alignment:
| Q |
22 |
attttgatgattttcgtgtatttagtagagagttcgatgattagaataaattaattagatgggagagaatgattgttcaaaatacatagagagaaagtta |
121 |
Q |
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| T |
25086194 |
attttgatgattttcgtgtatttagtagagagttcgatgatgaaaataaattaattagatgggagagaatgattgttcaaaatagatagagaaaaagtta |
25086293 |
T |
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| Q |
122 |
ccaaagagagagaattgaaaggtagataatctgcatcccataacttatgagttgaaataattttctctatcttctcaatgttatgatcagatggtgtatt |
221 |
Q |
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||| |||||| | ||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| || |
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| T |
25086294 |
ccagagagaggggattgaaaggtagataatatgcatcccataacttctgagttgaaatagttttctctatcttctcaatgttatgatcagatggtgactt |
25086393 |
T |
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| Q |
222 |
gtttt |
226 |
Q |
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||||| |
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| T |
25086394 |
gtttt |
25086398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 270
Target Start/End: Original strand, 25440521 - 25440610
Alignment:
| Q |
184 |
ttctctatcttctcaatgttatgatcagatgg-tgtattgtttt--gaagagaagcactgcatcagttcaaggaagataaatggattaat |
270 |
Q |
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||||||| |||||| ||||||||||| | || ||||||||||| |||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
25440521 |
ttctctagtttctcactgttatgatcaaaagggtgtattgttttttgaagagaagcactgcatcagttgaaggaagacaaatggattaat |
25440610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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