View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20599_low_4 (Length: 314)
Name: NF20599_low_4
Description: NF20599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20599_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 16 - 299
Target Start/End: Complemental strand, 32317488 - 32317204
Alignment:
| Q |
16 |
attaggagaatcgattcaaaataatcaacaaagaaaagagatgcattaggtatatgtaaaacttcatccattactttaaccatnnnnnnnnnnnnnnnnn |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32317488 |
attaggagaatcgattcaaaataatcaacaaagaaaagagatgcattaggtatatgtaaaacttcatccattactttaaccataaaaaataaaataaaaa |
32317389 |
T |
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| Q |
116 |
ttatccattacttcaattgaccactatacttgaaatacatnnnnnnnnnnnnnnnnnnn-gccacatatcgaactttatagcatttgttggatgtaatgt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
32317388 |
ttatccattacttcaattgaccactatacttgaaatacataaaaaagaaagaaaaaaaaagccacatatcgaactttatagcatttgttggatgtaatgt |
32317289 |
T |
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| Q |
215 |
gaacacagtaattatgaagtcacgttcgaaatgacctgcaagataagctgaaaaatgctctctttgcagcagggccatcagaaac |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32317288 |
gaacacagtaattatgaagtcacgttcgaaatgacctgcaagataagctgaaaaatgctctctttgcagcagggccatcagaaac |
32317204 |
T |
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