View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20599_low_6 (Length: 275)

Name: NF20599_low_6
Description: NF20599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20599_low_6
NF20599_low_6
[»] chr7 (29 HSPs)
chr7 (5-149)||(8654237-8654381)
chr7 (143-275)||(8654361-8654493)
chr7 (7-149)||(10494611-10494753)
chr7 (16-149)||(13333693-13333826)
chr7 (5-149)||(8667206-8667350)
chr7 (143-275)||(8667330-8667462)
chr7 (143-275)||(10494499-10494631)
chr7 (143-275)||(8659274-8659406)
chr7 (158-275)||(13333596-13333713)
chr7 (143-275)||(1301371-1301503)
chr7 (150-263)||(17260164-17260277)
chr7 (7-149)||(1301249-1301391)
chr7 (18-126)||(8585966-8586074)
chr7 (11-149)||(8659156-8659294)
chr7 (148-262)||(27831005-27831119)
chr7 (46-135)||(8616509-8616598)
chr7 (174-275)||(6789423-6789524)
chr7 (155-215)||(8545604-8545664)
chr7 (164-263)||(17267862-17267961)
chr7 (42-117)||(27831144-27831219)
chr7 (67-149)||(3147113-3147195)
chr7 (149-263)||(8646800-8646914)
chr7 (68-129)||(17267789-17267850)
chr7 (150-215)||(29581973-29582038)
chr7 (143-215)||(7877858-7877930)
chr7 (155-215)||(8570282-8570342)
chr7 (168-215)||(8576297-8576344)
chr7 (68-129)||(17260091-17260152)
chr7 (149-210)||(29577803-29577864)
[»] chr4 (3 HSPs)
chr4 (7-149)||(9336128-9336270)
chr4 (164-275)||(9336037-9336148)
chr4 (21-132)||(30775055-30775166)
[»] chr2 (10 HSPs)
chr2 (143-275)||(16657642-16657774)
chr2 (29-149)||(16657754-16657874)
chr2 (146-262)||(7542150-7542266)
chr2 (150-262)||(14703332-14703444)
chr2 (147-262)||(11999331-11999446)
chr2 (146-213)||(12234662-12234729)
chr2 (44-132)||(14703234-14703322)
chr2 (168-262)||(12245556-12245650)
chr2 (67-124)||(43625261-43625318)
chr2 (44-129)||(12258838-12258923)
[»] chr1 (5 HSPs)
chr1 (143-275)||(4678683-4678814)
chr1 (29-149)||(4678794-4678914)
chr1 (146-263)||(15594957-15595074)
chr1 (45-129)||(52549269-52549353)
chr1 (80-120)||(34467051-34467091)
[»] chr8 (2 HSPs)
chr8 (149-262)||(43744740-43744853)
chr8 (44-119)||(43744642-43744717)
[»] chr5 (2 HSPs)
chr5 (149-262)||(28219842-28219955)
chr5 (42-124)||(28219742-28219824)


Alignment Details
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 5 - 149
Target Start/End: Original strand, 8654237 - 8654381
Alignment:
Q  5 acatcatcaatatcattcttgtatatctttgaatctctgagacaactgtcaacaatattgatacactcattgaaaaagtccatattaatttcctcaaatt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8654237 acatcatcaatatcattcttgtatatctttgaatctctgagacaactgtcaacaatattgatacactcattgaaaaagtccatattaatttcctcaaatt 8654336  T
Q  105 tagcacgagtgattgatgaagaaaagtcgattcccataaataaag 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  8654337 tagcacgagtgattgatgaagaaaagtcgattcccataaataaag 8654381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 143 - 275
Target Start/End: Complemental strand, 8654493 - 8654361
Alignment:
Q  143 aataaagtggacattagtggtaacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctcttttacttttgtcaccactg 242  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8654493 aataaagtggaaattagcggtaacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctcttttacttttgtcaccactg 8654394  T
Q  243 ttgaggtagatgctttatttatgggaatcgact 275  Q
    |||||||||||||||||||||||||||||||||    
T  8654393 ttgaggtagatgctttatttatgggaatcgact 8654361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 7 - 149
Target Start/End: Complemental strand, 10494753 - 10494611
Alignment:
Q  7 atcatcaatatcattcttgtatatctttgaatctctgagacaactgtcaacaatattgatacactcattgaaaaagtccatattaatttcctcaaattta 106  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||  |||||||||| ||||||||||||||||||||     
T  10494753 atcatcaatatcattcttgtatatctttgaatccctgagacaactgtcaacaatattcatacactcgatgaaaaagtctatattaatttcctcaaatttg 10494654  T
Q  107 gcacgagtgattgatgaagaaaagtcgattcccataaataaag 149  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  10494653 gcacgagtgattgatgaagaaaagtcgattcccataaataaag 10494611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 16 - 149
Target Start/End: Complemental strand, 13333826 - 13333693
Alignment:
Q  16 atcattcttgtatatctttgaatctctgagacaactgtcaacaatattgatacactcattgaaaaagtccatattaatttcctcaaatttagcacgagtg 115  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||  |||||||||| |||||||||||||||||||| |||||||||    
T  13333826 atcactcttgtatatctttgaatccctgagacaactgtcaacaatattcatacactcgatgaaaaagtctatattaatttcctcaaatttggcacgagtg 13333727  T
Q  116 attgatgaagaaaagtcgattcccataaataaag 149  Q
    ||||||||||||||||||||||||||||||||||    
T  13333726 attgatgaagaaaagtcgattcccataaataaag 13333693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 5 - 149
Target Start/End: Original strand, 8667206 - 8667350
Alignment:
Q  5 acatcatcaatatcattcttgtatatctttgaatctctgagacaactgtcaacaatattgatacactcattgaaaaagtccatattaatttcctcaaatt 104  Q
    ||||||||||||||||||||||||||||||||||| ||||||||  ||||||| ||||| ||||||||||||||||||||||| |||| |||||||||||    
T  8667206 acatcatcaatatcattcttgtatatctttgaatccctgagacaggtgtcaactatattcatacactcattgaaaaagtccatgttaagttcctcaaatt 8667305  T
Q  105 tagcacgagtgattgatgaagaaaagtcgattcccataaataaag 149  Q
    |||||||||| ||||||||| |||||||||||||| |||||||||    
T  8667306 tagcacgagtaattgatgaacaaaagtcgattcccgtaaataaag 8667350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 143 - 275
Target Start/End: Complemental strand, 8667462 - 8667330
Alignment:
Q  143 aataaagtggacattagtggtaacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctcttttacttttgtcaccactg 242  Q
    |||||||||||||| |||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  8667462 aataaagtggacatcagtcagaacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctcttttgcttttgttaccactg 8667363  T
Q  243 ttgaggtagatgctttatttatgggaatcgact 275  Q
    ||||||||||||||||||||| |||||||||||    
T  8667362 ttgaggtagatgctttatttacgggaatcgact 8667330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 143 - 275
Target Start/End: Original strand, 10494499 - 10494631
Alignment:
Q  143 aataaagtggacattagtggtaacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctcttttacttttgtcaccactg 242  Q
    ||||| |||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |    
T  10494499 aataacgtggacatcagtgggaatccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctctttttcttttgtcaccaccg 10494598  T
Q  243 ttgaggtagatgctttatttatgggaatcgact 275  Q
    ||||||| |||||||||||||||||||||||||    
T  10494599 ttgaggtcgatgctttatttatgggaatcgact 10494631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 143 - 275
Target Start/End: Complemental strand, 8659406 - 8659274
Alignment:
Q  143 aataaagtggacattagtggtaacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctcttttacttttgtcaccactg 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||    
T  8659406 aataaagtggacattagtggtaacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaagaggacactctcttttgcttttgtcaccactg 8659307  T
Q  243 ttgaggtagatgctttatttatgggaatcgact 275  Q
    ||||||| ||| ||||||||  |||||| ||||    
T  8659306 ttgaggtcgattctttatttcagggaatagact 8659274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 158 - 275
Target Start/End: Original strand, 13333596 - 13333713
Alignment:
Q  158 agtggtaacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctcttttacttttgtcaccactgttgaggtagatgctt 257  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||| ||||||||||    
T  13333596 agtgggaacccaaaatccttaaggaggttgagaactgcctgtgagagggaaaaaaggatactctccttttcttttgtcaccactgttgaagtagatgctt 13333695  T
Q  258 tatttatgggaatcgact 275  Q
    ||||||||||||||||||    
T  13333696 tatttatgggaatcgact 13333713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 143 - 275
Target Start/End: Complemental strand, 1301503 - 1301371
Alignment:
Q  143 aataaagtggacattagtggtaacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctcttttacttttgtcaccactg 242  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||| |||| |||||||| |    
T  1301503 aataaagtggacattagtggtaaccagaaatccttaaggaggttgagaattgcgtgtgagagggcaaaaaggacactctcttttgctttagtcaccaccg 1301404  T
Q  243 ttgaggtagatgctttatttatgggaatcgact 275  Q
    ||||||| ||| ||||||||  |||||||||||    
T  1301403 ttgaggtcgattctttatttcagggaatcgact 1301371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 150 - 263
Target Start/End: Complemental strand, 17260277 - 17260164
Alignment:
Q  150 tggacattagtggtaacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctcttttacttttgtcaccactgttgaggt 249  Q
    ||||||||| ||| ||||||||| |||||||||||||||||||||| ||||| |  |||||||||| ||| |||||| | | ||| |||| |||||||||    
T  17260277 tggacattattgggaacccaaaagccttaaggaggttgagaactgcatgtgaaaaagcaaaaaggacactttcttttgcctctgtgaccaatgttgaggt 17260178  T
Q  250 agatgctttattta 263  Q
    ||| ||||||||||    
T  17260177 agacgctttattta 17260164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 7 - 149
Target Start/End: Original strand, 1301249 - 1301391
Alignment:
Q  7 atcatcaatatcattcttgtatatctttgaatctctgagacaactgtcaacaatattgatacactcattgaaaaagtccatattaatttcctcaaattta 106  Q
    |||||| |||||| || || |||| |||||||| || |||||||| |||||  | ||  |||||||||| ||||  |||||||||||||||||||| ||     
T  1301249 atcatcgatatcactcatgcatatttttgaatcgctaagacaactctcaacggtttttgtacactcattaaaaagatccatattaatttcctcaaacttg 1301348  T
Q  107 gcacgagtgattgatgaagaaaagtcgattcccataaataaag 149  Q
    |||||||||||| ||||| | ||||||||||||  ||||||||    
T  1301349 gcacgagtgattaatgaacagaagtcgattccctgaaataaag 1301391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 8586074 - 8585966
Alignment:
Q  18 cattcttgtatatctttgaatctctgagacaactgtcaacaatattgatacactcattgaaaaagtccatattaatttcctcaaatttagcacgagtgat 117  Q
    ||||||| | |||||| |||||  | |||||||| |||||| |||| ||||||||||| |||| ||||||||| ||||||||||| ||  |||| |||||    
T  8586074 cattcttctctatcttagaatcggtaagacaactctcaacagtatttatacactcattaaaaaggtccatattgatttcctcaaacttgacacgcgtgat 8585975  T
Q  118 tgatgaaga 126  Q
    |||||||||    
T  8585974 tgatgaaga 8585966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 149
Target Start/End: Original strand, 8659156 - 8659294
Alignment:
Q  11 tcaatatcattcttgtatatctttgaatctctgagacaactgtcaacaatattgatacactcattgaaaaagtccatattaatttcctcaaatttagcac 110  Q
    ||||||||| || | | ||| |||||||| || |||||||| |||||| | || ||||||||||| ||||  |||||||| |||||||||||  | ||||    
T  8659156 tcaatatcactcatctgtatttttgaatcgctaagacaactctcaacagttttcatacactcattaaaaagatccatattcatttcctcaaacctggcac 8659255  T
Q  111 gagtgattgatgaagaaaagtcgattcccataaataaag 149  Q
    |||||||| ||||| | ||||| ||||||  ||||||||    
T  8659256 gagtgattaatgaacagaagtctattccctgaaataaag 8659294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 148 - 262
Target Start/End: Original strand, 27831005 - 27831119
Alignment:
Q  148 agtggacattagtggtaacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctcttttacttttgtcaccactgttgag 247  Q
    ||||||||||||||| ||||||| | |||| |||||| |||||||    ||||||| ||||||||||| |||||||||| || ||| ||| ||| |||||    
T  27831005 agtggacattagtgggaacccaagagccttgaggaggctgagaacctaatgtgagaaggcaaaaaggacactctctttttctgttgacactactattgag 27831104  T
Q  248 gtagatgctttattt 262  Q
     ||||||| ||||||    
T  27831105 atagatgccttattt 27831119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 46 - 135
Target Start/End: Original strand, 8616509 - 8616598
Alignment:
Q  46 acaactgtcaacaatattgatacactcattgaaaaagtccatattaatttcctcaaatttagcacgagtgattgatgaagaaaagtcgat 135  Q
    |||||| |||||| | || |||||||| || |||| ||||||||| ||||||||||| ||| ||||||||||||||||||| || |||||    
T  8616509 acaactctcaacagtctttatacactcgttaaaaaggtccatattgatttcctcaaacttaacacgagtgattgatgaagagaaatcgat 8616598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 275
Target Start/End: Complemental strand, 6789524 - 6789423
Alignment:
Q  174 ccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctcttttacttttgtcaccactgttgaggtagatgctttatttatgggaatcga 273  Q
    ||||||| |||||||||||||| ||||| ||||| |||||| |||||||||||  | | ||||| ||| ||||||||||  ||||||||  ||| |||||    
T  6789524 ccttaagaaggttgagaactgcgtgtgaaagggccaaaagggtactctcttttgttgtcgtcactactattgaggtagactctttatttcagggcatcga 6789425  T
Q  274 ct 275  Q
    ||    
T  6789424 ct 6789423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 215
Target Start/End: Complemental strand, 8545664 - 8545604
Alignment:
Q  155 attagtggtaacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaagga 215  Q
    |||||| | |||||| || |||| ||||||||||||||||||||||||| |||||||||||    
T  8545664 attagtcggaacccagaagccttgaggaggttgagaactgcctgtgagaaggcaaaaagga 8545604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 263
Target Start/End: Complemental strand, 17267961 - 17267862
Alignment:
Q  164 aacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctcttttacttttgtcaccactgttgaggtagatgctttattta 263  Q
    ||||||||| || | ||||||||||||||||| ||||| |  |||||||||| ||| |||||  | | ||| |||| |||||||||||| ||||||||||    
T  17267961 aacccaaaagccatgaggaggttgagaactgcatgtgaaaaagcaaaaaggacactttctttcgcctctgtgaccaatgttgaggtagacgctttattta 17267862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 117
Target Start/End: Complemental strand, 27831219 - 27831144
Alignment:
Q  42 tgagacaactgtcaacaatattgatacactcattgaaaaagtccatattaatttcctcaaatttagcacgagtgat 117  Q
    |||||||||| |||||| | |  ||||| |||||||||| ||||||||| ||||||||||| || |||||||||||    
T  27831219 tgagacaactctcaacagtctccatacattcattgaaaaggtccatattgatttcctcaaactttgcacgagtgat 27831144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 149
Target Start/End: Original strand, 3147113 - 3147195
Alignment:
Q  67 acactcattgaaaaagtccatattaatttcctcaaatttagcacgagtgattgatgaagaaaagtcgattcccataaataaag 149  Q
    ||||||| ||||||  |||||||| ||||||||||| || |||||||||||||||||| | ||||| | ||||  ||||||||    
T  3147113 acactcagtgaaaagatccatattgatttcctcaaacttggcacgagtgattgatgaaaataagtcaaatccctgaaataaag 3147195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 263
Target Start/End: Complemental strand, 8646914 - 8646800
Alignment:
Q  149 gtggacattagtggtaacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctcttttacttttgtcaccactgttgagg 248  Q
    |||||||||| ||| ||| ||| | ||||||||||||||||||| || || ||||| |||||||||| ||| |||||| ||| |  ||||||  ||||      
T  8646914 gtggacattactggaaactcaagagccttaaggaggttgagaacggcatgcgagagagcaaaaaggacactatcttttgcttcttgcaccaccattgaat 8646815  T
Q  249 tagatgctttattta 263  Q
    ||||| |||||||||    
T  8646814 tagattctttattta 8646800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 129
Target Start/End: Original strand, 17267789 - 17267850
Alignment:
Q  68 cactcattgaaaaagtccatattaatttcctcaaatttagcacgagtgattgatgaagaaaa 129  Q
    |||||||  |||| ||||||||| ||||||||||| || |||||||||||||| ||||||||    
T  17267789 cactcatcaaaaaggtccatattgatttcctcaaacttggcacgagtgattgacgaagaaaa 17267850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 215
Target Start/End: Original strand, 29581973 - 29582038
Alignment:
Q  150 tggacattagtggtaacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaagga 215  Q
    ||||||||||||| ||||||||| | ||||||| | ||||||| || |||||||||||||| ||||    
T  29581973 tggacattagtgggaacccaaaagctttaaggaagctgagaacagcttgtgagagggcaaagagga 29582038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 215
Target Start/End: Original strand, 7877858 - 7877930
Alignment:
Q  143 aataaagtggacattagtggtaacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaagga 215  Q
    ||||||||||||||| |||| ||||| |   || | ||||||||||||||||| ||||||||||| |||||||    
T  7877858 aataaagtggacattggtggaaacccgagggcccttaggaggttgagaactgcatgtgagagggctaaaagga 7877930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 215
Target Start/End: Complemental strand, 8570342 - 8570282
Alignment:
Q  155 attagtggtaacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaagga 215  Q
    |||||| | ||||||||| |||| |||||||| ||||| || |||||||||||||||||||    
T  8570342 attagtaggaacccaaaagccttgaggaggttaagaacagcttgtgagagggcaaaaagga 8570282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 215
Target Start/End: Complemental strand, 8576344 - 8576297
Alignment:
Q  168 caaaatccttaaggaggttgagaactgcctgtgagagggcaaaaagga 215  Q
    ||||| |||||||||||||||||||||| ||||| | |||||||||||    
T  8576344 caaaagccttaaggaggttgagaactgcttgtgaaaaggcaaaaagga 8576297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 129
Target Start/End: Original strand, 17260091 - 17260152
Alignment:
Q  68 cactcattgaaaaagtccatattaatttcctcaaatttagcacgagtgattgatgaagaaaa 129  Q
    |||||||  |||| ||||||||| ||||| ||||| || |||||||||||||| ||||||||    
T  17260091 cactcataaaaaaggtccatattgatttcttcaaacttggcacgagtgattgacgaagaaaa 17260152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 210
Target Start/End: Original strand, 29577803 - 29577864
Alignment:
Q  149 gtggacattagtggtaacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaa 210  Q
    ||||||||||||   ||||||||| | ||||||| | |||||||||| ||||||||||||||    
T  29577803 gtggacattagtttgaacccaaaagctttaaggaagctgagaactgcttgtgagagggcaaa 29577864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 7 - 149
Target Start/End: Complemental strand, 9336270 - 9336128
Alignment:
Q  7 atcatcaatatcattcttgtatatctttgaatctctgagacaactgtcaacaatattgatacactcattgaaaaagtccatattaatttcctcaaattta 106  Q
    ||||||||||| | ||||||||||||||||||| ||||||||  ||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||     
T  9336270 atcatcaatattactcttgtatatctttgaatccctgagacaggtgtcaacaatattcatacactcattgaaaaagtccatgttaagttcctcaaatttg 9336171  T
Q  107 gcacgagtgattgatgaagaaaagtcgattcccataaataaag 149  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  9336170 gcacgagtgattgatgaagaaaagtcgattcccataaataaag 9336128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 164 - 275
Target Start/End: Original strand, 9336037 - 9336148
Alignment:
Q  164 aacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctcttttacttttgtcaccactgttgaggtagatgctttattta 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||    
T  9336037 aacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactgtcttttgcttttgttaccactgttgaggtagatgctttattta 9336136  T
Q  264 tgggaatcgact 275  Q
    ||||||||||||    
T  9336137 tgggaatcgact 9336148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 132
Target Start/End: Original strand, 30775055 - 30775166
Alignment:
Q  21 tcttgtatatctttgaatctctgagacaactgtcaacaatattgatacactcattgaaaaagtccatattaatttcctcaaatttagcacgagtgattga 120  Q
    |||||| || |||||||||  | |||||||| |||||| | |  ||||||||||| |||| ||||||||| ||||||||||| ||  |||||||||||||    
T  30775055 tcttgtctacctttgaatcagtaagacaactctcaacagtctgtatacactcattaaaaaggtccatattgatttcctcaaacttgacacgagtgattga 30775154  T
Q  121 tgaagaaaagtc 132  Q
    ||||||||||||    
T  30775155 tgaagaaaagtc 30775166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 143 - 275
Target Start/End: Original strand, 16657642 - 16657774
Alignment:
Q  143 aataaagtggacattagtggtaacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctcttttacttttgtcaccactg 242  Q
    ||||| |||||||| ||||| ||| ||| | |||| ||||||||||||||||| |||||||||||||| |||| |||||||||| |||||||||||||||    
T  16657642 aataaggtggacataagtgggaactcaagagccttgaggaggttgagaactgcatgtgagagggcaaagaggacactctcttttgcttttgtcaccactg 16657741  T
Q  243 ttgaggtagatgctttatttatgggaatcgact 275  Q
    ||||||||||| ||||||||  |||||| ||||    
T  16657742 ttgaggtagattctttatttcagggaattgact 16657774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 29 - 149
Target Start/End: Complemental strand, 16657874 - 16657754
Alignment:
Q  29 atctttgaatctctgagacaactgtcaacaatattgatacactcattgaaaaagtccatattaatttcctcaaatttagcacgagtgattgatgaagaaa 128  Q
    ||||||||||| |  |||||| | |||||| | || ||||||||||||||||  |||||||||||||||||||| || ||||| ||||||||||||||||    
T  16657874 atctttgaatcacgaagacaattctcaacagttttcatacactcattgaaaagatccatattaatttcctcaaacttggcacgggtgattgatgaagaaa 16657775  T
Q  129 agtcgattcccataaataaag 149  Q
    |||| ||||||  ||||||||    
T  16657774 agtcaattccctgaaataaag 16657754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 146 - 262
Target Start/End: Complemental strand, 7542266 - 7542150
Alignment:
Q  146 aaagtggacattagtggtaacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctcttttacttttgtcaccactgttg 245  Q
    ||||||||||||||||| || |||||| |||| ||||||||||||||||| |||||||||||||||||   ||| |||||   | ||||  ||||| |||    
T  7542266 aaagtggacattagtgggaatccaaaagccttgaggaggttgagaactgcttgtgagagggcaaaaagatcactttctttccttgttgttgccactattg 7542167  T
Q  246 aggtagatgctttattt 262  Q
    |||||||| ||||||||    
T  7542166 aggtagattctttattt 7542150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 262
Target Start/End: Complemental strand, 14703444 - 14703332
Alignment:
Q  150 tggacattagtggtaacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctcttttacttttgtcaccactgttgaggt 249  Q
    ||||||||||||| || |||||| |||||||||| |||||||| || || |||||||||||||| | ||| |||||     ||||| ||||| |||||||    
T  14703444 tggacattagtggaaatccaaaagccttaaggagcttgagaaccgcttgcgagagggcaaaaagaacactttctttccaagttgtcgccactattgaggt 14703345  T
Q  250 agatgctttattt 262  Q
    |||||||||||||    
T  14703344 agatgctttattt 14703332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 262
Target Start/End: Complemental strand, 11999446 - 11999331
Alignment:
Q  147 aagtggacattagtggtaacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctcttttacttttgtcaccactgttga 246  Q
    ||||||| |||||||| |   ||||| |||| ||||||||||||||||| ||||||||||||||||| ||||| || |||  | ||||  | ||| ||||    
T  11999446 aagtggatattagtggaagttcaaaagccttgaggaggttgagaactgcttgtgagagggcaaaaagaatactatcatttcttgttgttgcaactattga 11999347  T
Q  247 ggtagatgctttattt 262  Q
    ||||||| ||||||||    
T  11999346 ggtagattctttattt 11999331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 12234729 - 12234662
Alignment:
Q  146 aaagtggacattagtggtaacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaag 213  Q
    ||||||||||| ||||| || |||||| |||| |||||||| |||||||| |||||||||||||||||    
T  12234729 aaagtggacatgagtggaaatccaaaagccttgaggaggttaagaactgcttgtgagagggcaaaaag 12234662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 132
Target Start/End: Original strand, 14703234 - 14703322
Alignment:
Q  44 agacaactgtcaacaatattgatacactcattgaaaaagtccatattaatttcctcaaatttagcacgagtgattgatgaagaaaagtc 132  Q
    |||||||| |||||||| || | ||||||||| |||||||||||||| ||||| ||||| || || | | |||| ||||||||||||||    
T  14703234 agacaactctcaacaatcttcacacactcattaaaaaagtccatattcatttcttcaaacttggccctattgatcgatgaagaaaagtc 14703322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 262
Target Start/End: Original strand, 12245556 - 12245650
Alignment:
Q  168 caaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctcttttacttttgtcaccactgttgaggtagatgctttattt 262  Q
    ||||| |||| ||||| ||||||||||| ||||||||||||||||| ||||| || |||  | ||||  | ||| ||||||||||| ||||||||    
T  12245556 caaaagccttgaggagattgagaactgcttgtgagagggcaaaaagaatactttcgtttcttgttgttgcaactattgaggtagattctttattt 12245650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 43625261 - 43625318
Alignment:
Q  67 acactcattgaaaaagtccatattaatttcctcaaatttagcacgagtgattgatgaa 124  Q
    |||||| |||||||  |||||||| ||||| |||||||| ||||||||||||||||||    
T  43625261 acactcgttgaaaagatccatatttatttcatcaaatttggcacgagtgattgatgaa 43625318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 129
Target Start/End: Complemental strand, 12258923 - 12258838
Alignment:
Q  44 agacaactgtcaacaatattgatacactcattgaaaaagtccatattaatttcctcaaatttagcacgagtgattgatgaagaaaa 129  Q
    |||||||| |||||| | || || || ||||||||||  |||| ||| ||||||||||| || |||||| ||||||||| ||||||    
T  12258923 agacaactctcaacagtcttcatgcattcattgaaaagttccaaatttatttcctcaaacttggcacgattgattgatgcagaaaa 12258838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 143 - 275
Target Start/End: Original strand, 4678683 - 4678814
Alignment:
Q  143 aataaagtggacattagtggtaacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctcttttacttttgtcaccactg 242  Q
    ||||| ||||||||||||   ||| ||||| ||||||||||||||||||||||||| ||||||||||| |||| |||||||||  | |||||||||||||    
T  4678683 aataatgtggacattagtaagaacgcaaaacccttaaggaggttgagaactgcctgcgagagggcaaagaggacactctctttcgcctttgtcaccactg 4678782  T
Q  243 ttgaggtagatgctttatttatgggaatcgact 275  Q
    |||| |||||| ||||||||  |||||| ||||    
T  4678783 ttga-gtagattctttatttcagggaatagact 4678814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 149
Target Start/End: Complemental strand, 4678914 - 4678794
Alignment:
Q  29 atctttgaatctctgagacaactgtcaacaatattgatacactcattgaaaaagtccatattaatttcctcaaatttagcacgagtgattgatgaagaaa 128  Q
    ||||||||||| || |||||||| | |||| | |  |||||||| ||||||| ||||||||||||||||||||| || |||||||| || ||||||||||    
T  4678914 atctttgaatcactaagacaactcttaacagtttccatacactcgttgaaaaggtccatattaatttcctcaaacttggcacgagtaatagatgaagaaa 4678815  T
Q  129 agtcgattcccataaataaag 149  Q
    |||| ||||||  ||||||||    
T  4678814 agtctattccctgaaataaag 4678794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 146 - 263
Target Start/End: Complemental strand, 15595074 - 15594957
Alignment:
Q  146 aaagtggacattagtggtaacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctcttttacttttgtcaccactgttg 245  Q
    |||||||| |||| ||| |||||||   |||| ||||| ||||||||||| || || |||||||||||| ||||||||||||||  |||||| ||  |||    
T  15595074 aaagtggatattactgggaacccaagggccttgaggagattgagaactgcgtgcgaaagggcaaaaagggtactctcttttactactgtcactaccattg 15594975  T
Q  246 aggtagatgctttattta 263  Q
    ||||||||  ||||||||    
T  15594974 aggtagattgtttattta 15594957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 129
Target Start/End: Complemental strand, 52549353 - 52549269
Alignment:
Q  45 gacaactgtcaacaatattgatacactcattgaaaaagtccatattaatttcctcaaatttagcacgagtgattgatgaagaaaa 129  Q
    ||||||| |||||||| || |||||||| || |||| ||||||||| ||||||||||| || || | | |||| |||||||||||    
T  52549353 gacaactttcaacaatcttcatacactccttaaaaaggtccatattcatttcctcaaacttggccctattgatcgatgaagaaaa 52549269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 34467091 - 34467051
Alignment:
Q  80 aagtccatattaatttcctcaaatttagcacgagtgattga 120  Q
    ||||||||||| ||||||||||| || ||||||||||||||    
T  34467091 aagtccatattgatttcctcaaacttggcacgagtgattga 34467051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 149 - 262
Target Start/End: Complemental strand, 43744853 - 43744740
Alignment:
Q  149 gtggacattagtggtaacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctcttttacttttgtcaccactgttgagg 248  Q
    |||||||||| ||| ||||||| | | ||||||||||||||||| || || || || |||||||||| | | |||||| || ||||||||||| ||||||    
T  43744853 gtggacattactggaaacccaagagcattaaggaggttgagaacagcatgcgaaagagcaaaaaggacattatcttttgctgttgtcaccactattgagg 43744754  T
Q  249 tagatgctttattt 262  Q
    ||||| ||||||||    
T  43744753 tagattctttattt 43744740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 119
Target Start/End: Original strand, 43744642 - 43744717
Alignment:
Q  44 agacaactgtcaacaatattgatacactcattgaaaaagtccatattaatttcctcaaatttagcacgagtgattg 119  Q
    |||||||| |||||||| || | |||||| ||||| |  |||||||| ||||||||||| |||| |||||||||||    
T  43744642 agacaactctcaacaattttcaaacactcgttgaagagatccatattgatttcctcaaacttagtacgagtgattg 43744717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 149 - 262
Target Start/End: Complemental strand, 28219955 - 28219842
Alignment:
Q  149 gtggacattagtggtaacccaaaatccttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctcttttacttttgtcaccactgttgagg 248  Q
    |||||||||| ||| ||| ||| | ||||||||||||||||||| || ||  |||| |||||||||| ||| |||||| || ||||| ||||  ||||||    
T  28219955 gtggacattactggaaactcaagagccttaaggaggttgagaacagcgtgcaagagagcaaaaaggacactatcttttgctgttgtcgccaccattgagg 28219856  T
Q  249 tagatgctttattt 262  Q
    ||||| ||||||||    
T  28219855 tagattctttattt 28219842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 124
Target Start/End: Original strand, 28219742 - 28219824
Alignment:
Q  42 tgagacaactgtcaacaatattgatacactcattgaaaaagtccatattaatttcctcaaatttagcacgagtgattgatgaa 124  Q
    ||||||| || |||||| | || | ||||||||||||||  |||||||| ||||||||||| ||||||||||| |||||||||    
T  28219742 tgagacacctctcaacagttttcaaacactcattgaaaagatccatattgatttcctcaaacttagcacgagtaattgatgaa 28219824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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