View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20599_low_7 (Length: 268)
Name: NF20599_low_7
Description: NF20599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20599_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 34 - 152
Target Start/End: Original strand, 43414324 - 43414442
Alignment:
| Q |
34 |
ttgtttgagagaatttgcgttcaaattctaactatttgaaactctgatttnnnnnnnnnnnnnnnnnngtccttttcctaagtgcaagaaatattagaaa |
133 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
43414324 |
ttgtttgagagaatttgtgttcaaattctaactatttgaaactctgatttaaaaaaaaaaaaaaaaaagtccttttcctaagtgcaagaaatattagaaa |
43414423 |
T |
|
| Q |
134 |
ttattaacatatacatcct |
152 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
43414424 |
ttattaacatatacatcct |
43414442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 43414488 - 43414541
Alignment:
| Q |
197 |
ttggttgagcaacgttataacacatactagctagctacaagttaatggtgtaac |
250 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43414488 |
ttggttgagcgacgttataacacatactagctagctacaagttaatggtgtaac |
43414541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University