View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20599_low_9 (Length: 226)
Name: NF20599_low_9
Description: NF20599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20599_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 212
Target Start/End: Original strand, 38305632 - 38305824
Alignment:
| Q |
20 |
attgaggcttatgtctctgatttatacatgaaagagaaactgaagcttaaacaagaattggctgccattcctaataggatatctttaacttttgatttgt |
119 |
Q |
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| T |
38305632 |
attgaggcttatgtctctgatttatacatgaaagagaaactgaagcttaaacaagaattggctaccattcctaataggatatctttaacttttgatttgt |
38305731 |
T |
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| Q |
120 |
gggaatctaacactgctgagacttatatctgtttgactgcgcattttgttgacgcggattggaagttaaatagtaaggttctcaacttctgtg |
212 |
Q |
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| T |
38305732 |
gggaatctaacactgctgagacttatatctgtttgactgcgcattttgttgacgcggattggaagttaaatagtaaggttctcaacttctgtg |
38305824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 38316360 - 38316547
Alignment:
| Q |
20 |
attgaggcttatgtctctgatttatacatgaaagagaaactgaagcttaaacaagaattggctgccattcctaataggatatctttaacttttgatttgt |
119 |
Q |
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|||||||||||||| || |||| |||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
38316360 |
attgaggcttatgtttcgcatttgtacacgaaagagaaactaaagcttaaacaagaattggctagcattcctaataggatatctttaacttttgatttgt |
38316459 |
T |
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| Q |
120 |
gggaatctaacactgctgagacttatatctgtttgactgcgcattttgttgacgcggattggaagttaaatagtaaggttctcaactt |
207 |
Q |
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| T |
38316460 |
gggaatctaacaccactgagacttatatttgtttgacagctcattttgttgacgcgaattggaagttgaatagtaaggttctcaactt |
38316547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 21 - 211
Target Start/End: Original strand, 38312948 - 38313142
Alignment:
| Q |
21 |
ttgaggcttatgtctctgatttatacatgaaagagaaactgaagcttaaacaagaattggctgccattcctaata----ggatatctttaacttttgatt |
116 |
Q |
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| T |
38312948 |
ttgaggcttatgtctccgatttgtacacgaatcagaaactcaagcttaagcaagaattggctaccattcctaataaataggatatctttaacttttgatt |
38313047 |
T |
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| Q |
117 |
tgtgggaatctaacactgctgagacttatatctgtttgactgcgcattttgttgacgcggattggaagttaaatagtaaggttctcaacttctgt |
211 |
Q |
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||||||||||||| ||| ||||||||||||| ||||||||||| ||||| ||||| ||| ||||||||||||||||||| ||||||||||||||| |
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| T |
38313048 |
tgtgggaatctaatactactgagacttatatttgtttgactgctcatttcgttgatgcgaattggaagttaaatagtaaagttctcaacttctgt |
38313142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 51 - 211
Target Start/End: Original strand, 38299744 - 38299904
Alignment:
| Q |
51 |
aagagaaactgaagcttaaacaagaattggctgccattcctaataggatatctttaacttttgatttgtgggaatctaacactgctgagacttatatctg |
150 |
Q |
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| T |
38299744 |
aagagaaactcaatattaaacaacagctggctactattcctaataggatatctttaacttttgatctgtgggaatctaacactgctgagacttatatctg |
38299843 |
T |
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| Q |
151 |
tttgactgcgcattttgttgacgcggattggaagttaaatagtaaggttctcaacttctgt |
211 |
Q |
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| T |
38299844 |
tttgaccgctcattttgttgacgcggattggaagttaaatagtaaggttcttaatttctgt |
38299904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 38325205 - 38325396
Alignment:
| Q |
20 |
attgaggcttatgtctctgatttatacatgaaagagaaactgaagcttaaacaagaattggctgccattcctaataggatatctttaacttttgatttgt |
119 |
Q |
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||||||||||||||| || |||| ||||||||||||||| |||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
38325205 |
attgaggcttatgtcactcatttgtacatgaaagagaaatctaagcttaaacaacaattggctaccattcctaatagggtatctttaacttttgatttgt |
38325304 |
T |
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| Q |
120 |
gggaatctaacactgctgagacttatatctgtttgactgcgcattttgttgacgcggattggaagttaaatagtaaggttctcaacttctgt |
211 |
Q |
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|||||||| |||| || | |||| || ||| |||| || ||||||||||||||| |||||||| ||||||||||||||||||| |||||| |
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| T |
38325305 |
gggaatcttgcactactatgccttacatttgtctgaccgctcattttgttgacgcgaattggaaggtaaatagtaaggttctcaatttctgt |
38325396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 24 - 211
Target Start/End: Original strand, 38320462 - 38320649
Alignment:
| Q |
24 |
aggcttatgtctctgatttatacatgaaagagaaactgaagcttaaacaagaattggctgccattcctaataggatatctttaacttttgatttgtggga |
123 |
Q |
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||||||||||||| ||||| |||| ||||| |||||| ||||||||||| || |||||| |||||||||||||||||||||||||| ||||| ||||||| |
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| T |
38320462 |
aggcttatgtctcggatttgtacacgaaagcgaaactcaagcttaaacaggatttggctaccattcctaataggatatctttaactgttgatctgtggga |
38320561 |
T |
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| Q |
124 |
atctaacactgctgagacttatatctgtttgactgcgcattttgttgacgcggattggaagttaaatagtaaggttctcaacttctgt |
211 |
Q |
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||| |||| | ||||||||||| |||||||| || ||||||| ||||||| ||||||| ||||| ||||||||||||| ||||||| |
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| T |
38320562 |
atcatgcactaccgagacttatatttgtttgaccgctcattttgctgacgcgaattggaaattaaagagtaaggttctcaccttctgt |
38320649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 51 - 211
Target Start/End: Original strand, 38308396 - 38308556
Alignment:
| Q |
51 |
aagagaaactgaagcttaaacaagaattggctgccattcctaataggatatctttaacttttgatttgtgggaatctaacactgctgagacttatatctg |
150 |
Q |
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|
||||||||| ||||| |||||| || ||||| |||||||| ||| |||||||||||| ||||| |||||||||||| ||| ||| |||||||| || |
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| T |
38308396 |
aagagaaacataagctcaaacaacaactggctaccattccttataagatatctttaacctttgagttgtgggaatcttgtactactggcacttatatttg |
38308495 |
T |
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| Q |
151 |
tttgactgcgcattttgttgacgcggattggaagttaaatagtaaggttctcaacttctgt |
211 |
Q |
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||| | || |||||||||| ||||||||||||||||||||||||| || |||| |||||| |
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| T |
38308496 |
tttatccgctcattttgttggcgcggattggaagttaaatagtaagcttttcaatttctgt |
38308556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 39 - 204
Target Start/End: Complemental strand, 38850966 - 38850801
Alignment:
| Q |
39 |
atttatacatgaaagagaaactgaagcttaaacaagaattggctgccattcctaataggatatctttaacttttgatttgtgggaatctaacactgctga |
138 |
Q |
| |
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|||| |||| ||||||||||| |||||||||||| |||| || ||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
38850966 |
atttgtacacgaaagagaaacctaagcttaaacaacaattaactaccattcctaataggatatctttatcttttgatttgtgggaatctaacactactga |
38850867 |
T |
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| Q |
139 |
gacttatatctgtttgactgcgcattttgttgacgcggattggaagttaaatagtaaggttctcaa |
204 |
Q |
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||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
38850866 |
gacttatatttgtttgactgctcattttgttgacgcgaattggaagttaaatagtaaggttatcaa |
38850801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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