View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2059_high_1 (Length: 547)

Name: NF2059_high_1
Description: NF2059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2059_high_1
NF2059_high_1
[»] chr6 (4 HSPs)
chr6 (10-530)||(10978351-10978871)
chr6 (280-329)||(2879134-2879183)
chr6 (288-331)||(22569946-22569989)
chr6 (454-502)||(32930426-32930474)
[»] chr5 (6 HSPs)
chr5 (275-331)||(12029501-12029557)
chr5 (450-530)||(18608810-18608890)
chr5 (288-331)||(20860431-20860474)
chr5 (288-331)||(31600037-31600080)
chr5 (454-502)||(26070587-26070635)
chr5 (279-331)||(32415783-32415835)
[»] scaffold0210 (1 HSPs)
scaffold0210 (278-329)||(25216-25267)
[»] chr7 (9 HSPs)
chr7 (284-331)||(12865302-12865349)
chr7 (275-332)||(16536750-16536807)
chr7 (275-332)||(16628855-16628912)
chr7 (280-329)||(23689345-23689394)
chr7 (288-331)||(39270235-39270278)
chr7 (289-331)||(2506783-2506825)
chr7 (275-332)||(16577448-16577505)
chr7 (275-332)||(16588157-16588214)
chr7 (275-331)||(7494592-7494648)
[»] chr2 (10 HSPs)
chr2 (275-330)||(39730328-39730383)
chr2 (275-332)||(31449838-31449895)
chr2 (443-530)||(34077040-34077127)
chr2 (284-335)||(27907480-27907531)
chr2 (484-530)||(22115397-22115443)
chr2 (484-530)||(29862292-29862338)
chr2 (486-527)||(28413963-28414004)
chr2 (286-330)||(25532329-25532373)
chr2 (291-331)||(25886156-25886196)
chr2 (275-331)||(28278600-28278656)
[»] chr1 (3 HSPs)
chr1 (284-331)||(22624834-22624881)
chr1 (275-328)||(31313433-31313486)
chr1 (275-331)||(23223292-23223348)
[»] chr8 (4 HSPs)
chr8 (171-301)||(39438673-39438805)
chr8 (57-157)||(39438827-39438928)
chr8 (295-335)||(18446828-18446868)
chr8 (288-331)||(29765353-29765396)
[»] scaffold0049 (1 HSPs)
scaffold0049 (278-329)||(39612-39663)
[»] chr4 (5 HSPs)
chr4 (288-335)||(11782580-11782627)
chr4 (483-530)||(19217927-19217974)
chr4 (281-323)||(38656512-38656554)
chr4 (284-329)||(12286828-12286873)
chr4 (248-329)||(26117229-26117310)
[»] chr3 (10 HSPs)
chr3 (288-334)||(8765763-8765809)
chr3 (288-334)||(8770653-8770699)
chr3 (454-527)||(26484782-26484855)
chr3 (284-331)||(13938804-13938851)
chr3 (288-331)||(16223573-16223616)
chr3 (288-335)||(52935495-52935542)
chr3 (283-332)||(5632667-5632716)
chr3 (282-327)||(8145344-8145389)
chr3 (283-331)||(8402728-8402776)
chr3 (467-511)||(31279068-31279112)
[»] scaffold0282 (1 HSPs)
scaffold0282 (275-334)||(22720-22779)
[»] scaffold0072 (1 HSPs)
scaffold0072 (288-331)||(38383-38426)
[»] scaffold0043 (1 HSPs)
scaffold0043 (288-331)||(88398-88441)


Alignment Details
Target: chr6 (Bit Score: 489; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 10 - 530
Target Start/End: Original strand, 10978351 - 10978871
Alignment:
Q  10 gataatacttgattttgaatgactatttagaactgtttcaagttagaaagatgcattaacatgtcggctggagtgtgaaaatgcctcgacagccctgctg 109  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||    
T  10978351 gataatatttgattttgaatgactatttagaactgtttcaagttagaaagatgcattaacacgtcggctggagtgtgaaaatgcctcgattgccctgctg 10978450  T
Q  110 gctttaagatgatacattatgaaatatagtatggttgagagtatgatttaagcctttaccacttgagcaaaagcgggaagtagtcataacttcaagtgga 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10978451 gctttaagatgatacattatgaaatatagtatggttgagagtatgatttaagcctttaccacttgagcaaaagcgggaagtagtcataacttcaagtgga 10978550  T
Q  210 atgaacaatggtctgagaacccatatggaaatgtatgccatctaaatattaatgcaaattaagaattctttctattttgttacttgaggacaaacaacct 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  10978551 atgaacaatggtctgagaacccatatggaaatgtatgccatctaaatattaatgcaaattaagaattctttctattttgttacttgagggcaaacaacct 10978650  T
Q  310 tttaagtttggggttgtgatgataggatatttagctatgttttttagtcatttatttagagtctgaggtcatgctacaaatgttttagaggagattatca 409  Q
    |||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10978651 tttaagcttggggttgtgataataggatatttagctacgttttttagtcatttatttagagtctgaggtcatgctacaaatgttttagaggagattatca 10978750  T
Q  410 tggtttaagggatacattgtattgtttttcaattaagtcatttaagtctttttagtgagaaattatgaaatttggcaaatcaagacattacattgagtta 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10978751 tggtttaagggatacattgtattgtttttcaattaagtcatttaagtctttttagtgagaaattatgaaatttggcaaatcaagacattacattgagtta 10978850  T
Q  510 tgaaggcaagagaatgaagat 530  Q
    |||||||||||||||||||||    
T  10978851 tgaaggcaagagaatgaagat 10978871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 280 - 329
Target Start/End: Original strand, 2879134 - 2879183
Alignment:
Q  280 tctattttgttacttgaggacaaacaaccttttaagtttggggttgtgat 329  Q
    ||||||||||||||||||||||| |||| | |||||||||||||||||||    
T  2879134 tctattttgttacttgaggacaagcaacatattaagtttggggttgtgat 2879183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 288 - 331
Target Start/End: Complemental strand, 22569989 - 22569946
Alignment:
Q  288 gttacttgaggacaaacaaccttttaagtttggggttgtgatga 331  Q
    ||||||||||||||||||||  ||||||||||||||||||||||    
T  22569989 gttacttgaggacaaacaacaatttaagtttggggttgtgatga 22569946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 502
Target Start/End: Complemental strand, 32930474 - 32930426
Alignment:
Q  454 agtctttttagtgagaaattatgaaatttggcaaatcaagacattacat 502  Q
    ||||||||||||||||||| ||| || |||||||| |||||||| ||||    
T  32930474 agtctttttagtgagaaatcatgtaaattggcaaaacaagacatcacat 32930426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 275 - 331
Target Start/End: Original strand, 12029501 - 12029557
Alignment:
Q  275 ttctttctattttgttacttgaggacaaacaaccttttaagtttggggttgtgatga 331  Q
    ||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||    
T  12029501 ttctttctattttgttacttgaggacaaaaaatattttaagtttggggttgtgatga 12029557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 450 - 530
Target Start/End: Original strand, 18608810 - 18608890
Alignment:
Q  450 tttaagtctttttagtgagaaattatgaaatttggcaaatcaagacattacattgagttatgaaggcaagagaatgaagat 530  Q
    |||||| | ||||||||||||||  || |  | ||||||||||||||| |||| |||||||||||||||||||||||||||    
T  18608810 tttaagccattttagtgagaaatcgtgtaggtcggcaaatcaagacatcacatggagttatgaaggcaagagaatgaagat 18608890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 331
Target Start/End: Complemental strand, 20860474 - 20860431
Alignment:
Q  288 gttacttgaggacaaacaaccttttaagtttggggttgtgatga 331  Q
    ||||||||||||||| ||||  ||||||||||||||||||||||    
T  20860474 gttacttgaggacaagcaacagtttaagtttggggttgtgatga 20860431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 331
Target Start/End: Original strand, 31600037 - 31600080
Alignment:
Q  288 gttacttgaggacaaacaaccttttaagtttggggttgtgatga 331  Q
    ||||||||| ||||| ||||| ||||||||||||||||||||||    
T  31600037 gttacttgatgacaagcaaccatttaagtttggggttgtgatga 31600080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 502
Target Start/End: Original strand, 26070587 - 26070635
Alignment:
Q  454 agtctttttagtgagaaattatgaaatttggcaaatcaagacattacat 502  Q
    ||||||||||||||||||| ||| || |||||||| |||||||| ||||    
T  26070587 agtctttttagtgagaaatcatgtaaattggcaaaacaagacatcacat 26070635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 279 - 331
Target Start/End: Original strand, 32415783 - 32415835
Alignment:
Q  279 ttctattttgttacttgaggacaaacaaccttttaagtttggggttgtgatga 331  Q
    |||| ||| |||||||||| |||||||||  ||||||||| ||||||||||||    
T  32415783 ttctctttcgttacttgagaacaaacaacggtttaagtttagggttgtgatga 32415835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 329
Target Start/End: Complemental strand, 25267 - 25216
Alignment:
Q  278 tttctattttgttacttgaggacaaacaaccttttaagtttggggttgtgat 329  Q
    ||||||||||||||||||||||||| |||| | |||||||||||||||||||    
T  25267 tttctattttgttacttgaggacaagcaacatattaagtttggggttgtgat 25216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Complemental strand, 12865349 - 12865302
Alignment:
Q  284 ttttgttacttgaggacaaacaaccttttaagtttggggttgtgatga 331  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  12865349 ttttgttacttgaggacaaacaaccgtttaagttttgggttgtgatga 12865302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 275 - 332
Target Start/End: Complemental strand, 16536807 - 16536750
Alignment:
Q  275 ttctttctattttgttacttgaggacaaacaaccttttaagtttggggttgtgatgat 332  Q
    |||||| ||||||||| ||||||||||||||||  |||||||||  ||||||||||||    
T  16536807 ttctttttattttgttgcttgaggacaaacaacaatttaagtttaaggttgtgatgat 16536750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 275 - 332
Target Start/End: Original strand, 16628855 - 16628912
Alignment:
Q  275 ttctttctattttgttacttgaggacaaacaaccttttaagtttggggttgtgatgat 332  Q
    |||||| ||||||||| ||||||||||||||||  |||||||||  ||||||||||||    
T  16628855 ttctttttattttgttgcttgaggacaaacaacaatttaagtttaaggttgtgatgat 16628912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 280 - 329
Target Start/End: Complemental strand, 23689394 - 23689345
Alignment:
Q  280 tctattttgttacttgaggacaaacaaccttttaagtttggggttgtgat 329  Q
    ||||||||||||||||||||||  |||| | |||||||||||||||||||    
T  23689394 tctattttgttacttgaggacatgcaacatattaagtttggggttgtgat 23689345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 331
Target Start/End: Original strand, 39270235 - 39270278
Alignment:
Q  288 gttacttgaggacaaacaaccttttaagtttggggttgtgatga 331  Q
    ||||||||||||||| ||||  ||||||||||||||||||||||    
T  39270235 gttacttgaggacaagcaacaatttaagtttggggttgtgatga 39270278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 289 - 331
Target Start/End: Original strand, 2506783 - 2506825
Alignment:
Q  289 ttacttgaggacaaacaaccttttaagtttggggttgtgatga 331  Q
    |||||||||||||| ||||  ||||||||||||||||||||||    
T  2506783 ttacttgaggacaagcaactatttaagtttggggttgtgatga 2506825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 332
Target Start/End: Complemental strand, 16577505 - 16577448
Alignment:
Q  275 ttctttctattttgttacttgaggacaaacaaccttttaagtttggggttgtgatgat 332  Q
    |||||| |||||| || ||||||||||||||||  |||||||||  ||||||||||||    
T  16577505 ttctttttatttttttgcttgaggacaaacaacaatttaagtttaaggttgtgatgat 16577448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 332
Target Start/End: Original strand, 16588157 - 16588214
Alignment:
Q  275 ttctttctattttgttacttgaggacaaacaaccttttaagtttggggttgtgatgat 332  Q
    |||||| |||||| || ||||||||||||||||  |||||||||  ||||||||||||    
T  16588157 ttctttttatttttttgcttgaggacaaacaacaatttaagtttaaggttgtgatgat 16588214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 331
Target Start/End: Original strand, 7494592 - 7494648
Alignment:
Q  275 ttctttctattttgttacttgaggacaaacaaccttttaagtttggggttgtgatga 331  Q
    ||||| ||||| |||| ||||||||||| ||||  |||||||||| |||||||||||    
T  7494592 ttcttgctattgtgttgcttgaggacaagcaacagtttaagtttgtggttgtgatga 7494648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 275 - 330
Target Start/End: Original strand, 39730328 - 39730383
Alignment:
Q  275 ttctttctattttgttacttgaggacaaacaaccttttaagtttggggttgtgatg 330  Q
    ||||| |||||||||| |||||||||||| ||| ||||||||||||||||||||||    
T  39730328 ttcttgctattttgttgcttgaggacaaataacattttaagtttggggttgtgatg 39730383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 275 - 332
Target Start/End: Original strand, 31449838 - 31449895
Alignment:
Q  275 ttctttctattttgttacttgaggacaaacaaccttttaagtttggggttgtgatgat 332  Q
    ||||| ||| |||||||||||||||||| ||||  |||||||||||||||||||||||    
T  31449838 ttcttgctaatttgttacttgaggacaagcaacagtttaagtttggggttgtgatgat 31449895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 443 - 530
Target Start/End: Original strand, 34077040 - 34077127
Alignment:
Q  443 taagtcatttaagtctttttagtgagaaattatgaaatttggcaaatcaagacattacattgagttatgaaggcaagagaatgaagat 530  Q
    |||||| ||| |||| |||||||||||||| ||| ||||||||||| |||||||| |||| || ||||  |  |||||||||||||||    
T  34077040 taagtcttttgagtcattttagtgagaaatcatgtaatttggcaaaccaagacatcacatggaattatagaaccaagagaatgaagat 34077127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 335
Target Start/End: Original strand, 27907480 - 27907531
Alignment:
Q  284 ttttgttacttgaggacaaacaaccttttaagtttggggttgtgatgatagg 335  Q
    ||||||||||||||||||| ||||  |||||  |||||||||||||||||||    
T  27907480 ttttgttacttgaggacaagcaacaatttaaaattggggttgtgatgatagg 27907531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 484 - 530
Target Start/End: Complemental strand, 22115443 - 22115397
Alignment:
Q  484 gcaaatcaagacattacattgagttatgaaggcaagagaatgaagat 530  Q
    |||||||||||||| |||| |||||||| |||||||| |||||||||    
T  22115443 gcaaatcaagacatcacatagagttatgtaggcaagataatgaagat 22115397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 484 - 530
Target Start/End: Complemental strand, 29862338 - 29862292
Alignment:
Q  484 gcaaatcaagacattacattgagttatgaaggcaagagaatgaagat 530  Q
    |||||||||||||| |||| |||||||| ||| ||||||||||||||    
T  29862338 gcaaatcaagacatcacatagagttatggaggaaagagaatgaagat 29862292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 486 - 527
Target Start/End: Original strand, 28413963 - 28414004
Alignment:
Q  486 aaatcaagacattacattgagttatgaaggcaagagaatgaa 527  Q
    |||||||||||| |||| |||||||| |||||||||||||||    
T  28413963 aaatcaagacatcacatagagttatggaggcaagagaatgaa 28414004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 286 - 330
Target Start/End: Complemental strand, 25532373 - 25532329
Alignment:
Q  286 ttgttacttgaggacaaacaaccttttaagtttggggttgtgatg 330  Q
    ||||||||||||||||| ||||  ||||| |||||||||||||||    
T  25532373 ttgttacttgaggacaagcaacaatttaattttggggttgtgatg 25532329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 291 - 331
Target Start/End: Original strand, 25886156 - 25886196
Alignment:
Q  291 acttgaggacaaacaaccttttaagtttggggttgtgatga 331  Q
    |||||||||||| ||||  ||||||||||||||||||||||    
T  25886156 acttgaggacaagcaacaatttaagtttggggttgtgatga 25886196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 331
Target Start/End: Complemental strand, 28278656 - 28278600
Alignment:
Q  275 ttctttctattttgttacttgaggacaaacaaccttttaagtttggggttgtgatga 331  Q
    ||||| ||||| |||| ||||||||||| ||||  ||||||||| ||||||||||||    
T  28278656 ttcttgctattgtgttgcttgaggacaagcaacactttaagttttgggttgtgatga 28278600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Original strand, 22624834 - 22624881
Alignment:
Q  284 ttttgttacttgaggacaaacaaccttttaagtttggggttgtgatga 331  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  22624834 ttttgttacttgaggacaagcaaccgtttaagtttggggttgtgatga 22624881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 328
Target Start/End: Original strand, 31313433 - 31313486
Alignment:
Q  275 ttctttctattttgttacttgaggacaaacaaccttttaagtttggggttgtga 328  Q
    ||||| |||||||||| | ||||||||| ||||  |||||||||||||||||||    
T  31313433 ttcttgctattttgttgcctgaggacaagcaacagtttaagtttggggttgtga 31313486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 331
Target Start/End: Original strand, 23223292 - 23223348
Alignment:
Q  275 ttctttctattttgttacttgaggacaaacaaccttttaagtttggggttgtgatga 331  Q
    ||||||||||| |||| ||| |||||||  |||  ||||||||||||||||||||||    
T  23223292 ttctttctattgtgttgcttaaggacaagaaacaatttaagtttggggttgtgatga 23223348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 301
Target Start/End: Complemental strand, 39438805 - 39438673
Alignment:
Q  171 cttgagcaaaagcgggaagt-agtcataacttcaagtggaatgaacaatggtctgagaacccata-tggaaatgtatgccatctaaatattaatgcaaat 268  Q
    ||||||| ||||||| |||| ||||| | || ||||| ||| ||||||| || |||||||||||  |||||| ||||| |||||| ||||| ||||||||    
T  39438805 cttgagcgaaagcggtaagttagtcaaagctgcaagttgaacgaacaatagtttgagaacccattctggaaaggtatgtcatctacatatttatgcaaat 39438706  T
Q  269 taagaattctttctattttgttacttgaggaca 301  Q
    |  || ||||| ||||||||||||  |||||||    
T  39438705 tccgacttcttgctattttgttacccgaggaca 39438673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 57 - 157
Target Start/End: Complemental strand, 39438928 - 39438827
Alignment:
Q  57 aagatgcattaacatgtcggctggagtgtgaaaatgcctcgac-agccctgctggctttaagatgatacattatgaaatatagtatggttgagagtatga 155  Q
    ||||||||||||||| | |  |||||||  ||||||||| ||  | |||||||| ||||| |||||||||| ||| |||| ||| |||||||||||||||    
T  39438928 aagatgcattaacatattgaatggagtggaaaaatgccttgagtacccctgctgactttatgatgatacatgatggaatagagtgtggttgagagtatga 39438829  T
Q  156 tt 157  Q
    ||    
T  39438828 tt 39438827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 295 - 335
Target Start/End: Original strand, 18446828 - 18446868
Alignment:
Q  295 gaggacaaacaaccttttaagtttggggttgtgatgatagg 335  Q
    |||||||| |||| |||||||||||||||||||||||||||    
T  18446828 gaggacaagcaacattttaagtttggggttgtgatgatagg 18446868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 331
Target Start/End: Original strand, 29765353 - 29765396
Alignment:
Q  288 gttacttgaggacaaacaaccttttaagtttggggttgtgatga 331  Q
    ||||||||||||||| ||||  ||||||||||||||||||||||    
T  29765353 gttacttgaggacaagcaacaatttaagtttggggttgtgatga 29765396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 278 - 329
Target Start/End: Complemental strand, 39663 - 39612
Alignment:
Q  278 tttctattttgttacttgaggacaaacaaccttttaagtttggggttgtgat 329  Q
    ||||||||||||| ||||||||||| |||| | |||||||||||||||||||    
T  39663 tttctattttgttccttgaggacaagcaacatattaagtttggggttgtgat 39612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 288 - 335
Target Start/End: Complemental strand, 11782627 - 11782580
Alignment:
Q  288 gttacttgaggacaaacaaccttttaagtttggggttgtgatgatagg 335  Q
    ||||||||||||||| || | |||||||||||||||||||||||||||    
T  11782627 gttacttgaggacaagcaccattttaagtttggggttgtgatgatagg 11782580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 483 - 530
Target Start/End: Original strand, 19217927 - 19217974
Alignment:
Q  483 ggcaaatcaagacattacattgagttatgaaggcaagagaatgaagat 530  Q
    ||||||||||||||| || | |||||||| ||||||||||||||||||    
T  19217927 ggcaaatcaagacatcacgtggagttatggaggcaagagaatgaagat 19217974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 281 - 323
Target Start/End: Original strand, 38656512 - 38656554
Alignment:
Q  281 ctattttgttacttgaggacaaacaaccttttaagtttggggt 323  Q
    |||||||||||||||||||| ||||||  ||||||||||||||    
T  38656512 ctattttgttacttgaggacgaacaacaatttaagtttggggt 38656554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 329
Target Start/End: Complemental strand, 12286873 - 12286828
Alignment:
Q  284 ttttgttacttgaggacaaacaaccttttaagtttggggttgtgat 329  Q
    |||||||| |||||||||||||||  |||| |||||||||||||||    
T  12286873 ttttgttatttgaggacaaacaacggtttatgtttggggttgtgat 12286828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 329
Target Start/End: Original strand, 26117229 - 26117310
Alignment:
Q  248 catctaaatattaatgcaaattaagaattctttctattttgttacttgaggacaaacaaccttttaagtttggggttgtgat 329  Q
    |||||||| |||  ||||||||| || || || |||||||||||||| | |||||||||   ||||||||||||||| ||||    
T  26117229 catctaaaaatttgtgcaaattacgacttattgctattttgttacttaatgacaaacaatagtttaagtttggggttctgat 26117310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 334
Target Start/End: Complemental strand, 8765809 - 8765763
Alignment:
Q  288 gttacttgaggacaaacaaccttttaagtttggggttgtgatgatag 334  Q
    ||||||| ||||||| ||||| |||||||||||||||||||||||||    
T  8765809 gttacttcaggacaagcaaccgtttaagtttggggttgtgatgatag 8765763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 334
Target Start/End: Complemental strand, 8770699 - 8770653
Alignment:
Q  288 gttacttgaggacaaacaaccttttaagtttggggttgtgatgatag 334  Q
    ||||||| ||||||| ||||| |||||||||||||||||||||||||    
T  8770699 gttacttcaggacaagcaaccgtttaagtttggggttgtgatgatag 8770653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 454 - 527
Target Start/End: Original strand, 26484782 - 26484855
Alignment:
Q  454 agtctttttagtgagaaattatgaaatttggcaaatcaagacattacattgagttatgaaggcaagagaatgaa 527  Q
    |||| |||| |||| |||| ||| || | ||||||||||||||| |||| |||||||| |||||||||||||||    
T  26484782 agtcattttggtgataaatcatgtaaatcggcaaatcaagacatcacatggagttatgcaggcaagagaatgaa 26484855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 331
Target Start/End: Original strand, 13938804 - 13938851
Alignment:
Q  284 ttttgttacttgaggacaaacaaccttttaagtttggggttgtgatga 331  Q
    |||||||| || ||||||||||||  ||||||||||||||||||||||    
T  13938804 ttttgttatttcaggacaaacaacagtttaagtttggggttgtgatga 13938851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 331
Target Start/End: Complemental strand, 16223616 - 16223573
Alignment:
Q  288 gttacttgaggacaaacaaccttttaagtttggggttgtgatga 331  Q
    ||||||||||||||| ||||  ||||||||||||||||||||||    
T  16223616 gttacttgaggacaagcaacaatttaagtttggggttgtgatga 16223573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 335
Target Start/End: Original strand, 52935495 - 52935542
Alignment:
Q  288 gttacttgaggacaaacaaccttttaagtttggggttgtgatgatagg 335  Q
    ||||||||||||||| ||||  ||||| ||||||||||||||||||||    
T  52935495 gttacttgaggacaatcaacaatttaaatttggggttgtgatgatagg 52935542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 332
Target Start/End: Complemental strand, 5632716 - 5632667
Alignment:
Q  283 attttgttacttgaggacaaacaaccttttaagtttggggttgtgatgat 332  Q
    |||||||| |||| |||||| ||||  |||||||||||||||||||||||    
T  5632716 attttgttgcttggggacaagcaacggtttaagtttggggttgtgatgat 5632667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 327
Target Start/End: Complemental strand, 8145389 - 8145344
Alignment:
Q  282 tattttgttacttgaggacaaacaaccttttaagtttggggttgtg 327  Q
    ||||| ||||||||||||||| ||||  ||||||||||||||||||    
T  8145389 tatttagttacttgaggacaagcaacaatttaagtttggggttgtg 8145344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 283 - 331
Target Start/End: Complemental strand, 8402776 - 8402728
Alignment:
Q  283 attttgttacttgaggacaaacaaccttttaagtttggggttgtgatga 331  Q
    |||||||| |||||||| || ||||  ||||||||||||||||||||||    
T  8402776 attttgttgcttgaggaaaagcaacgatttaagtttggggttgtgatga 8402728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 467 - 511
Target Start/End: Complemental strand, 31279112 - 31279068
Alignment:
Q  467 agaaattatgaaatttggcaaatcaagacattacattgagttatg 511  Q
    |||||| ||| |||| | |||||||||||||||||||||||||||    
T  31279112 agaaatcatgtaattcgacaaatcaagacattacattgagttatg 31279068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 334
Target Start/End: Complemental strand, 22779 - 22720
Alignment:
Q  275 ttctttctattttgttacttgaggacaaacaaccttttaagtttggggttgtgatgatag 334  Q
    ||||| ||||| |||| ||||||| ||| ||||  |||||||||||||||||||||||||    
T  22779 ttcttgctattgtgttgcttgagggcaagcaacactttaagtttggggttgtgatgatag 22720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 331
Target Start/End: Complemental strand, 38426 - 38383
Alignment:
Q  288 gttacttgaggacaaacaaccttttaagtttggggttgtgatga 331  Q
    ||||||||||||||| ||||  ||||||||||||||||||||||    
T  38426 gttacttgaggacaagcaacaatttaagtttggggttgtgatga 38383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 331
Target Start/End: Original strand, 88398 - 88441
Alignment:
Q  288 gttacttgaggacaaacaaccttttaagtttggggttgtgatga 331  Q
    |||| |||||||||||||||  ||||||||||||||||||||||    
T  88398 gttaattgaggacaaacaacaatttaagtttggggttgtgatga 88441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University