View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2059_high_3 (Length: 401)
Name: NF2059_high_3
Description: NF2059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2059_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 1e-91; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 40848362 - 40848148
Alignment:
| Q |
18 |
gcactaatccatgaactgctggcctccccatgccccccaccaccacc----atttaaaagtacaatggtgagtactttagtaatattaaattatgtatgt |
113 |
Q |
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| T |
40848362 |
gcactaatccatgaactgctggcctccccatgccccgcccccccacccactatttaaaagtacaatggtgagtactttagtaatattaaattatgtatgt |
40848263 |
T |
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| Q |
114 |
ccaactgtcacatactaatactctataatctc-attatctactatatattatattatttacattaaattcacacgtgtttttttctatcaaaaaaattca |
212 |
Q |
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| T |
40848262 |
ccaactgtcacatactaatactctataatctctattatctactatatattatattatttacattaaattcacacgtg-ttttttctatcaaaaaaattca |
40848164 |
T |
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| Q |
213 |
aaagtgtttttaagtg |
228 |
Q |
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| T |
40848163 |
aaagtgtttttaagtg |
40848148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 12737562 - 12737598
Alignment:
| Q |
251 |
gctatgaattattttgcacactttatttccttaagag |
287 |
Q |
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| T |
12737562 |
gctatgaattattttgcacactttatttccttaagag |
12737598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 334 - 368
Target Start/End: Original strand, 12737662 - 12737696
Alignment:
| Q |
334 |
tataaaaaagtgccagcggctaaatgtgtgtgatt |
368 |
Q |
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| T |
12737662 |
tataaaaaagtgccagcggctaaatgtgtgtgatt |
12737696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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