View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2059_high_6 (Length: 286)
Name: NF2059_high_6
Description: NF2059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2059_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 41744466 - 41744236
Alignment:
| Q |
1 |
ataaagtacagagatgttgacg------cgagtcgtgtttatgaattggattaatgaagagaatagggtagtgatataaacgtattgatgggggtaatga |
94 |
Q |
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| T |
41744466 |
ataaagtacagagatgttgatgtagaaacgagtcgtgtttatgaattggattaatgaagagaatagggtagtgatataaacgtattgatgggggtaatga |
41744367 |
T |
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| Q |
95 |
tgaagaattttatgatcgtaaacaagagtaataaggagtaatgtcataaacatatatataaatacatatgatgagaaaagacgatgtctattttagggta |
194 |
Q |
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| T |
41744366 |
tgaagaattttatgaccataaacaagagtaatgaggactaatttcataaacatatatataaatacatatgatgagaaaagacgacgtctattttagggta |
41744267 |
T |
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| Q |
195 |
aacaatgagaaatgatggtgtctattgtgta |
225 |
Q |
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| T |
41744266 |
aacaatgagaaatgatggtgtctattgtgta |
41744236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 142
Target Start/End: Original strand, 18784973 - 18785090
Alignment:
| Q |
25 |
agtcgtgtttatgaattggattaatgaagagaatagggtagtgatataaacgtattgatgggggtaatgatgaagaattttatgatcgtaaacaagagta |
124 |
Q |
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| T |
18784973 |
agtcgtgtttatgaaatggattaatcaagaggatagggtagtaatctaaacgtcttgatgggggaaataataaagaatttattgactataaacaagagta |
18785072 |
T |
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| Q |
125 |
ataaggagtaatgtcata |
142 |
Q |
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| T |
18785073 |
ataagaagtaatgtcata |
18785090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 168
Target Start/End: Original strand, 34635485 - 34635625
Alignment:
| Q |
32 |
tttatgaattggattaatgaagagaatagggtagtgatataaacgtattgatgggggta------atgatgaagaattttatgatcgtaaacaagagtaa |
125 |
Q |
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||||||||||| |||||| || ||| || ||||||||||||||| | |||||||||| | |||||||||| ||||| || | || ||||||| | |
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| T |
34635485 |
tttatgaattgaattaataaaaaga-taaggtagtgatataaacttcttgatggggggaggggggatgatgaagagttttacga-ctcaatcaagagtga |
34635582 |
T |
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| Q |
126 |
taaggagtaatgtcataaacatatatataaatacatatgatga |
168 |
Q |
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| T |
34635583 |
tgaggggtaatgtcatatacttatatataaatacatatgatga |
34635625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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