View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2059_low_14 (Length: 221)

Name: NF2059_low_14

Description: NF2059

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF2059_low_14

[»] chr8 (1 HSPs)

[»] chr2 (1 HSPs)

Target: chr8 (Bit Score: 96; Significance: 3e-47; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 96; E-Value: 3e-47

Query Start/End: Original strand, 1 - 161

Target Start/End: Complemental strand, 38698396 - 38698244

Alignment:

Q	1	tagcattagcttctatctctgactcaaaaactttaattgtaacactattttaatttgaatatgaatgttaatcactgttgtttatctacactttgaaaag	100	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	38698396	tagcattagcttctatgtgtgaatcaaaagctttaattgtaatactattttaatttgaatattaatgttaatcatcgttatttatctacactttgaaaag	38698297	T

Q	101	agttgttgttgttgagaaattgagcgattgggatgttgttgttgctgagatttaagtcatg	161	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	38698296	agttgttgttgttgagaaattga--------gatgttgttgttgctgagatttaagtcatg	38698244	T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 33; E-Value: 0.000000001

Query Start/End: Original strand, 79 - 111

Target Start/End: Original strand, 19398490 - 19398522

Alignment:

Q	79	tgtttatctacactttgaaaagagttgttgttg	111	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	19398490	tgtttatctacactttgaaaagagttgttgttg	19398522	T

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