View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2059_low_4 (Length: 505)
Name: NF2059_low_4
Description: NF2059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2059_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 1e-91; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 280 - 465
Target Start/End: Original strand, 553149 - 553335
Alignment:
| Q |
280 |
catatttataaaa-gaaattaatttctcatctgaaaacaataaagaacttacatttcggagtttatactccaacaaagcagtttcaaactactacgaaac |
378 |
Q |
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| T |
553149 |
catatttataaaaagaaattaatttctcatctgaaaacaataaagaacttacatttcggagtttatactccaacaaagcagtttcaaactactacgaaac |
553248 |
T |
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| Q |
379 |
atagcatccatggtgcaagaagagtttctctgtatcactcaaatcaaaaccaggtggagctcctatctttcttaatgatgtccgtga |
465 |
Q |
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| T |
553249 |
atagcatccatggtgcaagaagagtttctccgtatcactcaaatcaaaaccaggtggagctcctatctttctcaatgatgtccgtga |
553335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 117 - 285
Target Start/End: Original strand, 552679 - 552847
Alignment:
| Q |
117 |
ttgatataattgagtggtgaattaattagttcagttcagtaaatgatgttggggatttcaaatcacatgcaggtctacactatctcttattctcttacat |
216 |
Q |
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| T |
552679 |
ttgatataattgagtggtgaattaattagttcagttcagtaaatgatgttggggatttcaaatcacatgcaggtctacactatctcttattctcttacat |
552778 |
T |
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| Q |
217 |
atatcgtagaacaaacaaaaatttgcataaaatagaagaaaagggtttaataaacccctaatgcatatt |
285 |
Q |
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| T |
552779 |
atatcgtagaacaaacaaaaatttgcataaaatagaagaaaagggtttaataaacccctaatgcatatt |
552847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 9 - 98
Target Start/End: Original strand, 552534 - 552623
Alignment:
| Q |
9 |
agcagagaatattttctcaagtatctgcagaaatgaaagagacaatcaagaattaaatttgcagaataatattaacaccaaaccatagaa |
98 |
Q |
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| T |
552534 |
agcagagaatattttctcaagtatctgcagaaatgaaagagacaatcaagaattaaatttgcagaataatattaacaccaaaccatagaa |
552623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 151 - 212
Target Start/End: Original strand, 546489 - 546550
Alignment:
| Q |
151 |
ttcagtaaatgatgttggggatttcaaatcacatgcaggtctacactatctcttattctctt |
212 |
Q |
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| T |
546489 |
ttcagcaaatgatattcgggatttcaaatcacatgctggtctacactatatcttattctctt |
546550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 458
Target Start/End: Original strand, 640723 - 640764
Alignment:
| Q |
417 |
tcaaatcaaaaccaggtggagctcctatctttcttaatgatg |
458 |
Q |
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| T |
640723 |
tcaaatcaaaaccaggtggagttactatctttctcaatgatg |
640764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 14 - 96
Target Start/End: Complemental strand, 51114505 - 51114421
Alignment:
| Q |
14 |
agaatattttctcaagtatctgcagaaatgaaagagacaatcaagaattaaatttgca---gaataatattaacaccaaaccatag |
96 |
Q |
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| T |
51114505 |
agaatattttctcagatatctaaaaaaa-gaaagagataatcaagaattaaatttgtactagaataatattaacaccaaaccatag |
51114421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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