View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2059_low_8 (Length: 374)
Name: NF2059_low_8
Description: NF2059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2059_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 3 - 361
Target Start/End: Original strand, 25923873 - 25924231
Alignment:
| Q |
3 |
accgtcacactctcaaaccctaccaactgtttcactggatttccatttctacctttctttggtttcacaaacagcaacacaggatgtttcccagccatgc |
102 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
25923873 |
accgtcacactctcaaaccctaccaactgttttactggatttccatttctacctttctttggcttcacaaacagcaacacaggatgtttcccagccatgc |
25923972 |
T |
|
| Q |
103 |
ttccagtatttgtaattcccaatgtgacagaaattgacatggtttgacatgtttcttcacctaactctgaaacaagtttgtaatagattgtttcagagtt |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25923973 |
ttccagtatttgtaattcccaatgtgacagaaattgacatggttttacatgtttcttcacctaactctgaaacaagtttgtaatagattgtttcagagtt |
25924072 |
T |
|
| Q |
203 |
ttcgagtatcgaatgagtggttgattggttgatgtgaagattgttgtttttgacggaaataaagttgtaggaataatttgagtagcttagaccatagccg |
302 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25924073 |
ttcgagtatcgaatgagtggttgattggttgatgtgaaggttgttgtttttgacggaaataaagttgtaggaataatttgagtagcttagaccatagccg |
25924172 |
T |
|
| Q |
303 |
aattcgtagacctttggacctgtgtagaaacggtaggttctaccgggatagcctgatga |
361 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25924173 |
aattcgtagacctttggacctgtgtagaaacggtaggttctaccgggatagcctgatga |
25924231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 25905028 - 25905390
Alignment:
| Q |
1 |
ccaccgtcacactctcaaaccctaccaactgtttcactggatttccatttctacctttctttggtttcacaaacagcaacacaggatgtttcccagccat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
25905028 |
ccaccgtcacactctcaaaccctaccaactgttttactggatttccatttctacctttctttggcttcacaaacagcaacacaggatgcttcccagccat |
25905127 |
T |
|
| Q |
101 |
gcttccagtatttgtaattcccaatgtgacagaaattgacatggtttgacatgtttcttcacctaactctgaaacaagtttgtaatagattgtttcagag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
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| T |
25905128 |
gcttccagtatttgtaattcccaatgtgacagaaattgacatggttttacatgtttcttcgcctaactctgaaacaagtttgtaattgattgtttcagag |
25905227 |
T |
|
| Q |
201 |
ttttcgagtatcgaatgagtggttgattggttgatgtgaagattgttgtttttgacggaaataaagttgtaggaataatttgagtagcttagaccatagc |
300 |
Q |
| |
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||||||||||| |||| |||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
25905228 |
ttttcgagtattgaataagtggttgattggttgatgtgaaggttgttatttttgacggaaatgaagttgtaggaataatttgagtagcttaggccatagc |
25905327 |
T |
|
| Q |
301 |
cgaattcgtagacctttggacctgtgtagaaacggtaggttctaccgggatagcctgatgatg |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25905328 |
cgaattcgtagacctttggacctgtgtagaaacggtaggttctaccgggatagcctgatgatg |
25905390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 3 - 363
Target Start/End: Original strand, 25883696 - 25884056
Alignment:
| Q |
3 |
accgtcacactctcaaaccctaccaactgtttcactggatttccatttctacctttctttggtttcacaaacagcaacacaggatgtttcccagccatgc |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25883696 |
accgtcacactctcaaaccctaccaactgttttactggatttccatttctacctttctttggtttcacaaacagcaacacaggatgtttcccagccatgc |
25883795 |
T |
|
| Q |
103 |
ttccagtatttgtaattcccaatgtgacagaaattgacatggtttgacatg-tttcttcacctaactctgaaacaagtttgtaatagattgtttcagagt |
201 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||| |||||||| ||||||||||||||| |||||||||||||| |
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|
| T |
25883796 |
ttccagtatttgtaattcccaatgttacagaaattgacatggttttacatgctttcttc-cctaactccgaaacaagtttgtaacggattgtttcagagt |
25883894 |
T |
|
| Q |
202 |
tttcgagtatcgaatgagtggttgattggttgatgtgaagattgttgtttttgacggaaataaagttgtaggaataatttgagtagcttagaccatagcc |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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|
| T |
25883895 |
tttcgagtatcgaatgagtggttgattggttgatgtgaatgttgttgtttttgacggaaatgaagttgtaggaataatttgagtagcttaggccatagcc |
25883994 |
T |
|
| Q |
302 |
gaattcgtagacctttggacctgtgtagaaacggtaggttctaccgggatagcctgatgatg |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25883995 |
gaattcgtagacctttggacctgtgtagaaacggtaggttctaccgggatagcctgatgatg |
25884056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 3 - 363
Target Start/End: Complemental strand, 25961396 - 25961036
Alignment:
| Q |
3 |
accgtcacactctcaaaccctaccaactgtttcactggatttccatttctacctttctttggtttcacaaacagcaacacaggatgtttcccagccatgc |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25961396 |
accgtcacactctcaaaccctaccaactgttttactggatttccatttctacctttctttggtttcacaaacagcaacacaggatgtttcccagccatgc |
25961297 |
T |
|
| Q |
103 |
ttccagtatttgtaattcccaatgtgacagaaattgacatggtttgacatg-tttcttcacctaactctgaaacaagtttgtaatagattgtttcagagt |
201 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||| |||||||| |||||||||||||||| |||||||| ||| | |
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| T |
25961296 |
ttccagtatttgtaattcccaatgttacagaaattgacatggttttacatgctttcttc-cctaactccgaaacaagtttgtaatggattgtttgagatt |
25961198 |
T |
|
| Q |
202 |
tttcgagtatcgaatgagtggttgattggttgatgtgaagattgttgtttttgacggaaataaagttgtaggaataatttgagtagcttagaccatagcc |
301 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
25961197 |
tttcgagtattgaataagtggttgattggttgatgtgaaggttgttatttttgacggaaatgaagttgtaggaataatttgagtagcttagaccatagcc |
25961098 |
T |
|
| Q |
302 |
gaattcgtagacctttggacctgtgtagaaacggtaggttctaccgggatagcctgatgatg |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25961097 |
gaattcgtagacctttggacctgtgtagaaacggtaggttctaccgggatagcctgatgatg |
25961036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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