View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2059_low_9 (Length: 360)

Name: NF2059_low_9
Description: NF2059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2059_low_9
NF2059_low_9
[»] chr8 (1 HSPs)
chr8 (2-343)||(27423701-27424042)
[»] chr6 (1 HSPs)
chr6 (10-228)||(29179389-29179607)
[»] chr2 (4 HSPs)
chr2 (78-228)||(42296055-42296205)
chr2 (36-212)||(38715010-38715187)
chr2 (54-200)||(18609864-18610008)
chr2 (173-228)||(14918264-14918317)
[»] chr7 (4 HSPs)
chr7 (37-133)||(22068307-22068403)
chr7 (78-203)||(18152035-18152158)
chr7 (173-228)||(6239249-6239304)
chr7 (34-141)||(32401922-32402029)
[»] chr4 (6 HSPs)
chr4 (76-228)||(35945004-35945154)
chr4 (77-132)||(27258945-27259000)
chr4 (78-141)||(44344385-44344448)
chr4 (77-132)||(21201805-21201860)
chr4 (156-225)||(1064828-1064897)
chr4 (78-224)||(2916361-2916506)
[»] chr3 (1 HSPs)
chr3 (10-228)||(35408436-35408654)
[»] chr1 (2 HSPs)
chr1 (161-228)||(10359089-10359156)
chr1 (173-211)||(52973650-52973688)


Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 2 - 343
Target Start/End: Original strand, 27423701 - 27424042
Alignment:
Q  2 cccattcggtcttagagaatttgacaataaagataaaagtagctaagttttgctttaatgattaacatgaaaatagtttgtttaaaagaagctttaaagg 101  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||| ||||||||||||||| ||||||      
T  27423701 cccatttggtcttagagaatttgacaataaagataaaaatagctaagttttattttaatgattaacatgaaaataatttgtttaaaagaagttttaaaaa 27423800  T
Q  102 ttgtaacaaactaaacttacaaacataattattacctaattgttcctccaccacaaaagtggtttaacttgtaatgaacataaacacaaaaataaaaatg 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||    
T  27423801 ttgtaacaaactaaacttacaaacataattattacctaattgttcctccaccacaaaagtggtttaacttataatgaacttaaacataaaaataaaaatg 27423900  T
Q  202 gagaagataatgaataaaaacataatttttagttcaatttaggagagtaggggagtaaaatccctcttagactcattcattattccaccccaaattaaag 301  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||||| |||||||||||    
T  27423901 gagaagataatgaataaaaacataatctttagttcaatttaggagggtaggggagtaaaatccctcttagactcattcatttctccacaccaaattaaag 27424000  T
Q  302 tttttaggaggggatgaaaaatgtggagacttgaattattac 343  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  27424001 tttttaggaggggatgaaaaatgtggagacttgagttattac 27424042  T

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Target: chr6 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 10 - 228
Target Start/End: Original strand, 29179389 - 29179607
Alignment:
Q  10 gtcttagagaatttgacaataaagataaaagtagctaagttttgctttaatgattaacatgaaaatagtttgtttaaaagaagctttaaaggttgtaaca 109  Q
    ||||||||||||||  ||||||||||||||||| ||||||||| |||||| ||||||||| |||||||||||||||||| |||||||||||||||||||     
T  29179389 gtcttagagaatttcgcaataaagataaaagtaactaagttttactttaaagattaacattaaaatagtttgtttaaaataagctttaaaggttgtaacc 29179488  T
Q  110 aactaaacttacaaacataattattacctaattgttcctccaccacaaaagtggtttaacttgtaatgaacataaacacaaaaataaaaatggagaagat 209  Q
    ||||  |||| ||||  |||||||||||||||  || ||  ||||||||||| ||||| ||  ||||  || |||||||||||||| |||||||||||||    
T  29179489 aactgtacttgcaaagttaattattacctaatcatttcttaaccacaaaagtcgtttagctcataatagacttaaacacaaaaatagaaatggagaagat 29179588  T
Q  210 aatgaataaaaacataatt 228  Q
    || | | ||||| ||||||    
T  29179589 aacggaaaaaaatataatt 29179607  T

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Target: chr2 (Bit Score: 79; Significance: 7e-37; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 78 - 228
Target Start/End: Original strand, 42296055 - 42296205
Alignment:
Q  78 tttgtttaaaagaagctttaaaggttgtaacaaactaaacttacaaacataattattacctaattgttcctccaccacaaaagtggtttaacttgtaatg 177  Q
    ||||||| |||||||||||||||||||||||||||| || ||||  ||||||||||||| ||||  |||||  ||||||||||||||||| ||  |||||    
T  42296055 tttgtttgaaagaagctttaaaggttgtaacaaactgaaattactgacataattattacttaatcattccttaaccacaaaagtggtttagctcataatg 42296154  T
Q  178 aacataaacacaaaaataaaaatggagaagataatgaataaaaacataatt 228  Q
    |||||||||||||||||| |||| |||||||||||   |||||||||||||    
T  42296155 aacataaacacaaaaatataaatagagaagataatagttaaaaacataatt 42296205  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 36 - 212
Target Start/End: Complemental strand, 38715187 - 38715010
Alignment:
Q  36 aaaagtagctaagttttgcttt-aatgattaacatgaaaatagtttgtttaaaagaagctttaaaggttgtaacaaactaaacttacaaacataattatt 134  Q
    ||||||||||||||||| |||  || ||||| ||| |||||||||||||||||| |||||||||||||||||||||| |  |||| ||||||||||||||    
T  38715187 aaaagtagctaagttttacttccaaagattagcattaaaatagtttgtttaaaataagctttaaaggttgtaacaaaatgtacttgcaaacataattatt 38715088  T
Q  135 acctaattgttcctccaccacaaaagtggtttaacttgtaatgaacataaacacaaaaataaaaatggagaagataat 212  Q
    | | |||   ||||  | ||||||| ||||||| ||  | ||||||  |||||| |||||| ||||||||||||||||    
T  38715087 atcgaatcaatccttaatcacaaaaatggtttatctcatgatgaactcaaacacgaaaatagaaatggagaagataat 38715010  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 54 - 200
Target Start/End: Original strand, 18609864 - 18610008
Alignment:
Q  54 ctttaatgattaacatgaaaatagtttgtttaaaagaagctttaaaggttgtaacaaactaaacttacaaacataattattacctaattgttcctccacc 153  Q
    |||||| ||||  ||| |||||||||||||| |||||||  ||||||||| ||||||||  ||||||||||  ||||||||| |||||  |||||  |||    
T  18609864 ctttaaagatttgcattaaaatagtttgtttgaaagaag--ttaaaggttataacaaacgtaacttacaaatttaattattatctaatcattccttaacc 18609961  T
Q  154 acaaaagtggtttaacttgtaatgaacataaacacaaaaataaaaat 200  Q
    |||||||| ||||| |||  ||||||| | |||||||||||||||||    
T  18609962 acaaaagttgtttagcttacaatgaacttgaacacaaaaataaaaat 18610008  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 14918317 - 14918264
Alignment:
Q  173 taatgaacataaacacaaaaataaaaatggagaagataatgaataaaaacataatt 228  Q
    ||||||| |||||||||||  ||||||||||||||||||   ||||||||||||||    
T  14918317 taatgaatataaacacaaa--taaaaatggagaagataagagataaaaacataatt 14918264  T

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Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 37 - 133
Target Start/End: Original strand, 22068307 - 22068403
Alignment:
Q  37 aaagtagctaagttttgctttaatgattaacatgaaaatagtttgtttaaaagaagctttaaaggttgtaacaaactaaacttacaaacataattat 133  Q
    |||||||||||||||| ||| || ||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||| ||||    
T  22068307 aaagtagctaagttttacttcaaagattagcattaaaatagtttgtttaaaagaagcttttaaggttgtaacaaactaaacttgcaaatatagttat 22068403  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 78 - 203
Target Start/End: Complemental strand, 18152158 - 18152035
Alignment:
Q  78 tttgtttaaaagaagctttaaaggttgtaacaaactaaacttacaaacataattattacctaattgttcctccaccacaaaagtggtttaacttgtaatg 177  Q
    ||||||| ||||||||||||| |||||||||||||| |||||  |||||||||||||| |||||  |||||   |||||||||||||| |  |  |||||    
T  18152158 tttgtttgaaagaagctttaa-ggttgtaacaaactgaacttgaaaacataattattatctaatcattccttagccacaaaagtggtt-agttcataatg 18152061  T
Q  178 aacataaacacaaaaataaaaatgga 203  Q
    ||| |||||||||||||| |||||||    
T  18152060 aacttaaacacaaaaatagaaatgga 18152035  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 6239304 - 6239249
Alignment:
Q  173 taatgaacataaacacaaaaataaaaatggagaagataatgaataaaaacataatt 228  Q
    ||||||||||||||||||||||  |||||||||||||||   ||||||||||||||    
T  6239304 taatgaacataaacacaaaaattgaaatggagaagataagatataaaaacataatt 6239249  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 141
Target Start/End: Complemental strand, 32402029 - 32401922
Alignment:
Q  34 ataaaagtagctaagttttgcttt-aatgattaacatgaaaatagtttgtttaaaagaagctttaaaggttgtaacaaactaaacttacaaacataatta 132  Q
    |||||||||| |||||||| |||| ||  |||| | | ||||||||||||| ||||||||| ||||| |||| ||| |||| ||||| |||| ||||||     
T  32402029 ataaaagtagttaagttttactttcaaatattagctttaaaatagtttgttgaaaagaagc-ttaaatgttgaaaccaacttaacttgcaaatataattt 32401931  T
Q  133 ttacctaat 141  Q
    |||| ||||    
T  32401930 ttacataat 32401922  T

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Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 76 - 228
Target Start/End: Complemental strand, 35945154 - 35945004
Alignment:
Q  76 agtttgtttaaaagaagctttaaaggttgtaacaaactaaacttacaaacataattattacctaattgttcctccaccacaaaagtggtttaacttgtaa 175  Q
    ||||||||| |||||| ||||||| ||| ||||||||||||||| |||||||||||||||||||||  |||    ||||||||||| | ||| ||| |||    
T  35945154 agtttgtttgaaagaaactttaaaagttataacaaactaaacttgcaaacataattattacctaatcattctataaccacaaaagt-gattaccttataa 35945056  T
Q  176 tgaacataaacacaaaaataaaaatggagaagataatgaataaaaacataatt 228  Q
    ||||| |||||||||| | ||||||||| |||||||   ||||||||||||||    
T  35945055 tgaacttaaacacaaata-aaaaatggaaaagataagagataaaaacataatt 35945004  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 77 - 132
Target Start/End: Original strand, 27258945 - 27259000
Alignment:
Q  77 gtttgtttaaaagaagctttaaaggttgtaacaaactaaacttacaaacataatta 132  Q
    |||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||    
T  27258945 gtttgtttgaaagaagctttgaaggttgtaacaaactaaacttgcaaacataatta 27259000  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 78 - 141
Target Start/End: Original strand, 44344385 - 44344448
Alignment:
Q  78 tttgtttaaaagaagctttaaaggttgtaacaaactaaacttacaaacataattattacctaat 141  Q
    ||||||| ||||||| |||||||||||||||||| | ||||| |||||||||||||||||||||    
T  44344385 tttgtttgaaagaagatttaaaggttgtaacaaattgaacttgcaaacataattattacctaat 44344448  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 132
Target Start/End: Original strand, 21201805 - 21201860
Alignment:
Q  77 gtttgtttaaaagaagctttaaaggttgtaacaaactaaacttacaaacataatta 132  Q
    |||||||| ||||||||||| ||||||||||| |||||||||| ||||||||||||    
T  21201805 gtttgtttgaaagaagctttgaaggttgtaactaactaaacttgcaaacataatta 21201860  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 225
Target Start/End: Complemental strand, 1064897 - 1064828
Alignment:
Q  156 aaaagtggtttaacttgtaatgaacataaacacaaaaataaaaatggagaagataatgaataaaaacata 225  Q
    |||||||||||| ||  |||||| | |||||||||||| | || |||| |||||||||||||||||||||    
T  1064897 aaaagtggtttatctcataatgagcttaaacacaaaaacataattggaaaagataatgaataaaaacata 1064828  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 224
Target Start/End: Original strand, 2916361 - 2916506
Alignment:
Q  78 tttgtttaaaagaagctttaaaggttgtaacaaactaaacttacaaacataattattacctaattgttcctccaccacaaaagtggtttaacttgtaatg 177  Q
    ||||||| ||| ||| |||||| ||||||||||||| ||| | |||| ||||||||||||| ||  || |   ||||||||||||| |||| |  ||||     
T  2916361 tttgtttgaaataagttttaaatgttgtaacaaactgaacatgcaaatataattattaccttatcatttcctaaccacaaaagtgg-ttaattcataata 2916459  T
Q  178 aacataaacacaaaaataaaaatggagaagataatgaataaaaacat 224  Q
    ||| ||||||| |||||| ||||||| || ||||   ||||||||||    
T  2916460 aacttaaacacgaaaatagaaatggaaaatataagagataaaaacat 2916506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 10 - 228
Target Start/End: Original strand, 35408436 - 35408654
Alignment:
Q  10 gtcttagagaatttgacaataaagataaaagtagct-aagttttgctttaatgattaacatgaaaatagtttgtttaaaagaagctttaaaggttgtaac 108  Q
    ||||||||||||||| || ||||||||||| ||||| || |||| |||||| ||| || || |||||||||||||||||  || | ||||||||||||||    
T  35408436 gtcttagagaatttgccattaaagataaaattagctaaacttttactttaaagatcaatattaaaatagtttgtttaaagtaatc-ttaaaggttgtaac 35408534  T
Q  109 aaactaaacttacaaacataattattacctaattgttcctccaccacaaaagtggtttaacttgtaatgaacataaacacaaaaataaaaatggagaaga 208  Q
    ||| | ||||  |||| |||| ||||||| |||  ||| |  |||||| |||| || || ||   ||||| | ||||||  |||||| ||||||| ||||    
T  35408535 aaatttaactagcaaatataactattaccaaatcattctttaaccacagaagtcgtatagctcacaatgagcttaaacatgaaaatagaaatggataaga 35408634  T
Q  209 taatgaataaaaacataatt 228  Q
    | ||  ||||||||||||||    
T  35408635 ttatagataaaaacataatt 35408654  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 228
Target Start/End: Complemental strand, 10359156 - 10359089
Alignment:
Q  161 tggtttaacttgtaatgaacataaacacaaaaataaaaatggagaagataatgaataaaaacataatt 228  Q
    ||||||||||  |||||||| ||||  |||||||| ||||||||||||||||||||||||| ||||||    
T  10359156 tggtttaactcataatgaacttaaaatcaaaaatagaaatggagaagataatgaataaaaatataatt 10359089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 52973650 - 52973688
Alignment:
Q  173 taatgaacataaacacaaaaataaaaatggagaagataa 211  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  52973650 taatgaacataaacacaataatagaaatggagaagataa 52973688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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