View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20600_high_4 (Length: 244)
Name: NF20600_high_4
Description: NF20600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20600_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 38751474 - 38751247
Alignment:
| Q |
1 |
cagtcacatgaagaatctttacaatgatattatatatttcattcaaaaccatgtgagtcctgcttctccatttgaacaaagaagcaacaatagtgctact |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
38751474 |
cagtcacatgaagaatctttacaatgatattatatatttcattcaaaaccatgtgagtcctgcttctccctttgaacaaagaagcaacaatagtgctact |
38751375 |
T |
|
| Q |
101 |
attttgaagcttgttgaattggattcatcatcacctcaattaccaaatgataaagattgtaacagctcttctgtgaagctctttggtgttcctctttgtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38751374 |
attttgaagcttgttgaattggattcatcatcacctcaattaccaaatgataaagattgtaatagctcttctgtgaagctctttggtgttcctctttgtg |
38751275 |
T |
|
| Q |
201 |
gaaaaaagagggttcatcctagtaatct |
228 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
38751274 |
gaaaaaagagggttcatcctagtaatct |
38751247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 3020975 - 3021202
Alignment:
| Q |
1 |
cagtcacatgaagaatctttacaatgatattatatatttcattcaaaaccatgtgagtcctgcttctccatttgaacaaagaagcaacaatagtgctact |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| || |
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| T |
3020975 |
cagtcacatgaagaatctttacaatgatattatatatttcattcaaaaccatgtgagtcctgcttctccctttgaataaagaagcaacaatagtgcttct |
3021074 |
T |
|
| Q |
101 |
attttgaagcttgttgaattggattcatcatcacctcaattaccaaatgataaagattgtaacagctcttctgtgaagctctttggtgttcctctttgtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||| |
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| T |
3021075 |
attttgaagcttgttgaattggattcatcatcacctcaattaccaaatgataaagattgtaatagctcttctgttaagctttttggtgttcctctttgtg |
3021174 |
T |
|
| Q |
201 |
gaaaaaagagggttcatcctagtaatct |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
3021175 |
gaaaaaagagggttcatcctagtaatct |
3021202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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