View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20600_high_7 (Length: 212)
Name: NF20600_high_7
Description: NF20600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20600_high_7 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 2796014 - 2795803
Alignment:
| Q |
1 |
tataaaattgttacaagtgaaaatggacataatgtagaaagacttgatggcaaaaaagagattgatttcacttagaaactatagcagagaaacaaatatt |
100 |
Q |
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| T |
2796014 |
tataaaattgttataagtgaaaatggacataatgtagaaagacttgatggcaaaaaagagattgatttcacttagaaactatagcagagaaacaaatatt |
2795915 |
T |
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| Q |
101 |
aaatcataaaattcgtgcaacggtaaatcacttactgctctcttttcgctattcaaccttcggattgatggagctcgtgccattggggaagcggttgtta |
200 |
Q |
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| T |
2795914 |
aaatcataaaattcgtgcaacggtaaatcacttactgctctcttttcgctattcaaccttcggattgatggagctcgtgccattggggaagcggttgtta |
2795815 |
T |
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| Q |
201 |
caggtattctgc |
212 |
Q |
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|||||||||||| |
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| T |
2795814 |
caggtattctgc |
2795803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 59 - 192
Target Start/End: Complemental strand, 48671084 - 48670950
Alignment:
| Q |
59 |
agattgatttcacttagaaactatagcagagaaacaaatatt-aaatcataaaattcgtgcaacggtaaatcacttactgctctcttttcgctattcaac |
157 |
Q |
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| T |
48671084 |
agattgatttcacttggaaactatagcagagaaacaaatattaaaatcataaaagatgcgtaacgttaaaccacttaccgctcccttttggccagtcatc |
48670985 |
T |
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| Q |
158 |
cttcggattgatggagctcgtgccattggggaagc |
192 |
Q |
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| T |
48670984 |
cttcggactgatggagctcgtgccattgaggaagc |
48670950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 159 - 192
Target Start/End: Complemental strand, 16391722 - 16391689
Alignment:
| Q |
159 |
ttcggattgatggagctcgtgccattggggaagc |
192 |
Q |
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| T |
16391722 |
ttcggattgatggagctcgtgccattgaggaagc |
16391689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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