View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20600_low_2 (Length: 250)
Name: NF20600_low_2
Description: NF20600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20600_low_2 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 30 - 250
Target Start/End: Original strand, 182161 - 182374
Alignment:
| Q |
30 |
gttgattgaatattgaaaaatatgaagtgtacaaa-tatgattgatgtcgagaacaatgatttaatggtacgtgattaattgaatattacaactaactaa |
128 |
Q |
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| T |
182161 |
gttgattgaatattgaaaaatatgaagtgtacaaaatatcattgatgtcgacaacaatgatttaatggtacgtgattaattgaatattacaactaactaa |
182260 |
T |
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| Q |
129 |
caaacaacacactcttcaattctgtcattctcattctgtgtgcagaagcacaattttaaatttattattattaatataatatgcaacttggtttttgacc |
228 |
Q |
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| T |
182261 |
caaacaacacactcttcaattctgtcatcctcattctgtgtgcagaagcacaattttaaatttattat--------taatatgcaacttggtttttgacc |
182352 |
T |
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| Q |
229 |
ataaatattaacattaaccaca |
250 |
Q |
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|||||||||||||||||||||| |
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| T |
182353 |
ataaatattaacattaaccaca |
182374 |
T |
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