View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20600_low_3 (Length: 245)
Name: NF20600_low_3
Description: NF20600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20600_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 182371 - 182604
Alignment:
| Q |
1 |
cacacttactttccatataggtagaagaagaaagaaaaaactctttcactcctatatataaatctctgatatcatattcatagtgatcacatttaatgaa |
100 |
Q |
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| T |
182371 |
cacacttactttccatataggtagaagaagaaagaaacaactctttcactcctatatataaatctctgatatcatattcatagtgatcacatttaatgaa |
182470 |
T |
|
| Q |
101 |
aaacaactctagagagatgagtaaggaggtgacaacaccattgataagaaaga---atgatgagattgagagtacatttgttcaagagttgaagaaagtg |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
182471 |
aaacaactctagagagatgagtaaggaggtgacaacaccattgataagaaagagtgatcatgagattgagagtacatttgttcaagagttgaagaaagtg |
182570 |
T |
|
| Q |
198 |
agtttcgtggcagctccaatggtagctgtaactg |
231 |
Q |
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|||||||| ||||||||||||||||||||||||| |
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| T |
182571 |
agtttcgttgcagctccaatggtagctgtaactg |
182604 |
T |
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