View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20600_low_6 (Length: 225)
Name: NF20600_low_6
Description: NF20600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20600_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 83 - 208
Target Start/End: Complemental strand, 36204266 - 36204144
Alignment:
| Q |
83 |
aaccacaaagctggacattaaacaaggaaaaataagtacctcatgactaaaatatgattcaggaggaaaagaaagattctctccttctttggtagaagta |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
36204266 |
aaccacaaagctggacattaaacaaggaaaaacaagtacctcatgactaaaatatgattcaggaggaaaagaaagattctctc---ctttggtagaagta |
36204170 |
T |
|
| Q |
183 |
gaaccaagctcattcttggaagcatt |
208 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
36204169 |
gaaccaagctcattcttggaagcatt |
36204144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 36204374 - 36204286
Alignment:
| Q |
1 |
aaacatcctttaacaattgatcacatgcatgcattgtacaaaacacaatcatgaccagaaagggcaagaaggattacatagcaaccaca |
89 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36204374 |
aaacatcctttaacaattgatcacatgcatgcattgtacaaaacacaatcatgaccagaaagggcaagaaggattacatagcaaccaca |
36204286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University