View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20601_high_1_N (Length: 627)
Name: NF20601_high_1_N
Description: NF20601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20601_high_1_N |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-123; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 26 - 338
Target Start/End: Original strand, 26303182 - 26303494
Alignment:
| Q |
26 |
catcatcaactactatttatggtctcacctttcataatcaaaattaaatacacaatattgaatgtg-tctttacacatatgggcacataaagtatgcagc |
124 |
Q |
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| T |
26303182 |
catcatcaactactatttagggtctcatctttcataatcacaattaaatacacaaaattcaatgtgatatttagaattatgggcatataaagtatgtagc |
26303281 |
T |
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| Q |
125 |
tcatactattctaactttgatgcattaaattaagttgcaagaaattcagctattaagtataactagcccatgcagacaagagttggtaaacatcataatc |
224 |
Q |
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| T |
26303282 |
tcatactattctaactttgatgcattaaattaagttgcaagaaattcagctattaagtataactagcccatgcagacaagagttggtaaacatcataatc |
26303381 |
T |
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| Q |
225 |
tagcaatcaatgtcaacttatattttgtatttcttttacaagnnnnnnnncattattttgatttttgacaatataataattacaccagaagaatcttgac |
324 |
Q |
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| T |
26303382 |
tagcaatcaatgtcaacttatatttcgtatttcttttacaag-aaaaaaacattattttgatttttgacaatataataattacaccagcagaatcttgac |
26303480 |
T |
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| Q |
325 |
cttattggcttttc |
338 |
Q |
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| T |
26303481 |
cttattggcttttc |
26303494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 364 - 476
Target Start/End: Original strand, 26303491 - 26303603
Alignment:
| Q |
364 |
tttcagtatatttcttgtttagttttttattgcccaacttacaaactagtcaacagctaagtagcttcgacactttagattaaaagagtgtctgtgtcag |
463 |
Q |
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| T |
26303491 |
tttcagtatatttcttgttttgtttttaattgaccaacttacaaactagttaacacccaagtagctttgacactttagtttaaaagagtgtttgtgtcgg |
26303590 |
T |
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| Q |
464 |
ttttcgatatgtg |
476 |
Q |
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| T |
26303591 |
tgttcgatatgtg |
26303603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 505 - 595
Target Start/End: Original strand, 26303683 - 26303775
Alignment:
| Q |
505 |
cgtgtaagtattggtgtcgtgtctatcaatgtttggtaggtcaatactattgatactcaacttgtgtgttac--aaagtatcttcgacctata |
595 |
Q |
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| T |
26303683 |
cgtgtaagtatcggtgtcgtgtctatcaatgtttggtaggtcaacactattgatactcaacttgtgtgttacataaaatatcttccacctata |
26303775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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