View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20601_high_2 (Length: 407)
Name: NF20601_high_2
Description: NF20601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20601_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 30 - 397
Target Start/End: Complemental strand, 44473862 - 44473495
Alignment:
| Q |
30 |
aagagtctccgtaatgttcgagtaggggcttacaaattgtactcctttcacagacaatggatgtgtttatgctactggtctcaatgattttggacagctc |
129 |
Q |
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| T |
44473862 |
aagagtctccgtaatgttcgagtaggggcttacaaattgtactcctttcacagacaatggatgtgtttatgctactggtctcaatgattttggacagctc |
44473763 |
T |
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| Q |
130 |
ggtacatcggagagtaaaccctacacagttgtatgattactttgccttttttcctgtatttttgtcaagtaaactgatgacaattgcaacatcttgttct |
229 |
Q |
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| T |
44473762 |
ggtacatcggagagtaaaccctactcagttgtatgattactttgccttttttcctgtatttttgtcaagtaaactgatgacaattgcaacatcttgttct |
44473663 |
T |
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| Q |
230 |
tttgctctaatgttcatgagtgcattacttgccagcattttcttgtttgcgatattttattcacttgtctgtaatgtttcaggtgccacttcaagttttt |
329 |
Q |
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| T |
44473662 |
tttgctctaatgttcatgagtgcattacttgccagcattttcttgtttgcgatattttattcacttgtctgtaatgtttcaggtgccacttcaagttttt |
44473563 |
T |
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| Q |
330 |
gggcacgagaagaaagttgtacggatctctgctggttataatcattccagtgcaataacaggtctgtg |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44473562 |
gggcacgagaagaaagttgtacggatctctgctggttataatcattccagtgcaataacaggtctgtg |
44473495 |
T |
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