View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20601_high_3 (Length: 327)
Name: NF20601_high_3
Description: NF20601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20601_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 3 - 206
Target Start/End: Complemental strand, 1786799 - 1786596
Alignment:
| Q |
3 |
tccgtcgagcagagttgaaagttcgttgttccgttacaattcaatttaatttccgtttgttcgttttttacactttcttgatttggactgtgaaatcgtt |
102 |
Q |
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| T |
1786799 |
tccgtcgtgaagagttgaaagttcgttgttccgttacaattcaatttaatttccgtttgttcgttttttacactttcttgatttggactgtgaaatcgtt |
1786700 |
T |
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| Q |
103 |
tgatattgactgagtgcgtgctattttatatgatcattgcgttttctgtgagtttcagcttctttggattcggttctgttgtgagattaggtaacgtagt |
202 |
Q |
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| T |
1786699 |
tgatattgactgagtgcgtgcgattttatatgatcattgcgttttctgtgagtttcagcttctttggattcggttctgttgtgagattaggtaacgtagt |
1786600 |
T |
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| Q |
203 |
ttgg |
206 |
Q |
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|||| |
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| T |
1786599 |
ttgg |
1786596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 251 - 307
Target Start/End: Complemental strand, 1786560 - 1786504
Alignment:
| Q |
251 |
gaagctgtttttggttgaatttttattgaagttttgcatattctgatgtgatgatgt |
307 |
Q |
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| T |
1786560 |
gaagctgtttttggttgaatttttattgaagttttgcatattctgatgtgttgatgt |
1786504 |
T |
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