View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20601_low_1 (Length: 360)
Name: NF20601_low_1
Description: NF20601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20601_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 9 - 341
Target Start/End: Original strand, 44473530 - 44473862
Alignment:
| Q |
9 |
agcagagatccgtacaactttcttctcgtgcccaaaaacttgaagtggcacctgaaacattacagacaagtgaataaaatatcgcaaacaagaaaatgct |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44473530 |
agcagagatccgtacaactttcttctcgtgcccaaaaacttgaagtggcacctgaaacattacagacaagtgaataaaatatcgcaaacaagaaaatgct |
44473629 |
T |
|
| Q |
109 |
ggcaagtaatgcactcatgaacattagagcaaaagaacaagatgttgcaattgtcatcagtttacttgacaaaaatacaggaaaaaaggcaaagtaatca |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44473630 |
ggcaagtaatgcactcatgaacattagagcaaaagaacaagatgttgcaattgtcatcagtttacttgacaaaaatacaggaaaaaaggcaaagtaatca |
44473729 |
T |
|
| Q |
209 |
tacaactgagtagggtttactctccgatgtaccgagctgtccaaaatcattgagaccagtagcataaacacatccattgtctgtgaaaggagtacaattt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44473730 |
tacaactgagtagggtttactctccgatgtaccgagctgtccaaaatcattgagaccagtagcataaacacatccattgtctgtgaaaggagtacaattt |
44473829 |
T |
|
| Q |
309 |
gtaagcccctactcgaacattacggagactctt |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
44473830 |
gtaagcccctactcgaacattacggagactctt |
44473862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University