View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20602_high_10 (Length: 244)
Name: NF20602_high_10
Description: NF20602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20602_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 58 - 226
Target Start/End: Original strand, 38021809 - 38021977
Alignment:
| Q |
58 |
cattaatcaatatcaaattgcttaactctacctttcttcttaacaattaatacaatgagttcaagaagccaagcatggaaatggagtgtggcaacaagtg |
157 |
Q |
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| T |
38021809 |
cattaatcaatatcaaattgcttaacactacctttcttcttaacaattaatacaatgagttcaagaagccaagcatggaaatggagtgtggcaacaagtg |
38021908 |
T |
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| Q |
158 |
ttggagtggtggaggctttgaaggatcaaggaatatgcagatggaacagtgttataagatcagcacaac |
226 |
Q |
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| T |
38021909 |
ttggagtggtggaggctttgaaggatcaaggaatatgcagatggaacagtgttataagatcagcacaac |
38021977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 102 - 226
Target Start/End: Original strand, 38033749 - 38033873
Alignment:
| Q |
102 |
aattaatacaatgagttcaagaagccaagcatggaaatggagtgtggcaacaagtgttggagtggtggaggctttgaaggatcaaggaatatgcagatgg |
201 |
Q |
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| T |
38033749 |
aattaatacaatgagttcaagaagccgagcttggacgtggagtgtggcaacaagtgttggagttgtggaggctttgaaagatcaaggaatatgcagatgg |
38033848 |
T |
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| Q |
202 |
aacagtgttataagatcagcacaac |
226 |
Q |
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| T |
38033849 |
aacagtgttataagatcagcacaac |
38033873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 38019190 - 38019239
Alignment:
| Q |
154 |
agtgttggagtggtggaggctttgaaggatcaaggaatatgcagatggaa |
203 |
Q |
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| T |
38019190 |
agtgttgcagttgtggaagcattaaaggatcaaggaatatgcagatggaa |
38019239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 37993499 - 37993539
Alignment:
| Q |
148 |
gcaacaagtgttggagtggtggaggctttgaaggatcaagg |
188 |
Q |
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| T |
37993499 |
gcaacaagtgttggattggtggagacattgaaggatcaagg |
37993539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 40
Target Start/End: Original strand, 38021760 - 38021788
Alignment:
| Q |
12 |
tcatcaaccattaatcaatatctcttgtc |
40 |
Q |
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| T |
38021760 |
tcatcaaccattaatcaatatctcttgtc |
38021788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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