View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20602_high_3 (Length: 475)
Name: NF20602_high_3
Description: NF20602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20602_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 6 - 456
Target Start/End: Original strand, 44142255 - 44142705
Alignment:
| Q |
6 |
tggacatcatcaaagataagggtaaggagaaaaaggtaggaaatggggtgaattatgtctccctgagggatcactggtgaatgaactgtgaagaattaaa |
105 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
44142255 |
tggaaatcataaaagataagggtaaggagaaaaaggtaggaaatggggtgaattatgtctccctgagggatcagtggtgagtgaactgtgaagaattaaa |
44142354 |
T |
|
| Q |
106 |
caaaaatagccaaaggcatggctcagagtttcatttggtatggaaaaactgtagtaagaaaataaattaataaaactatgttcagagtaaatgaaatttg |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
44142355 |
caaaaatagccaaaggcatggctcagagtttcatttggtatggaaaaactgtagtaagaaaataaattaataaaaccatgttcagagtaaatgaaatttg |
44142454 |
T |
|
| Q |
206 |
cacccagaaaacaaagtggagctatgtaaattctttacagccctaataaaaccataaatccaagttctaaaataattttgactcccaaaattgaaaccaa |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44142455 |
cacccagaaaacaaagtggagctatgtaaattctttatagccctaataaaaccataaatccaagttctaaaataattttgactcccaaaattgaaaccaa |
44142554 |
T |
|
| Q |
306 |
acatatgtttattcatactaacttatacattacattataaactaaccattatataagatagcatttttggtgatgtcaaagaaagacggtgtattattag |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
44142555 |
acatatgtttattcatactaacttatacattacataataaactaaccattatataagatagcatttttcgtgatgtcaaagaaagacggtgtattattag |
44142654 |
T |
|
| Q |
406 |
attcaattggattctatatttgtaagatttattagactggcataacttctc |
456 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
44142655 |
attcaattggattctatatttgtaagatttattagactgccataacttctc |
44142705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 290 - 443
Target Start/End: Original strand, 44121691 - 44121840
Alignment:
| Q |
290 |
ccaaaattgaaaccaaacatatgtttattcatactaacttatacattacattataaactaaccattatataagatagcatttttggtgatgtcaaagaaa |
389 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| |||||||||| || | |||||||||||||| || |||||||||||| | |||||||||||| | |
|
|
| T |
44121691 |
ccaaaattaaaaccaaacatatgcttattcatgctaacttatatatga-----taaactaaccattaaattagatagcattttcg-tgatgtcaaagaga |
44121784 |
T |
|
| Q |
390 |
gacg--gtgtattattagattcaattggattctatatttgtaagatttattagact |
443 |
Q |
| |
|
| | |||||||| || | ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
44121785 |
gccatagtgtattactatagtcaattggattctatatttgtaagattgattagact |
44121840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 6 - 456
Target Start/End: Original strand, 50062907 - 50063368
Alignment:
| Q |
6 |
tggacatcatcaaagataagggtaaggagaaaaaggtaggaaatggggtgaattatg-----------tctccctgagggatcactggtgaatgaactgt |
94 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||| |||||| |||||| | |
|
|
| T |
50062907 |
tggaaatcataaaagataagggtaaggagaaaaaggttggaaatggggtgaattatgaagtgtggacgtcaccctgagggatcagtggtgagtgaactat |
50063006 |
T |
|
| Q |
95 |
gaagaattaaacaaaaatagccaaaggcatggctcagagtttcatttggtatggaaaaactgtagtaagaaaataaattaataaaactatgttcagagta |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50063007 |
gaagaattaaacaaaaatagccaaaggcatggctcagagtttcatttggtatggaaaaactgtagtaagaaaataaattaataaaactatgttcagagta |
50063106 |
T |
|
| Q |
195 |
aatgaaatttgcacccagaaaacaaagtggagctatgtaaattctttacagccctaataaaaccataaatccaagttctaaaataattttgactcccaaa |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50063107 |
aatgaaatttgcacccagaaaacaaagtggagctatggaaattctttacagccctaataaaaccataaatccaagttctaaaataattttgactcccaaa |
50063206 |
T |
|
| Q |
295 |
attgaaaccaaacatatgtttattcatactaacttatacattacattataaactaaccattatataagatagcatttttggtgatgtcaaagaaagacgg |
394 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
50063207 |
attgaaaccaaacataggcttattcatactaacttatacattacattataaactaaccattatataagataacatttttggtgatgtcaaagaaagacgg |
50063306 |
T |
|
| Q |
395 |
tgtattattagattcaattggattctatatttgtaagatttattagactggcataacttctc |
456 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
50063307 |
tgtattattagattcaattggattctatatttgtaagatatattagactgccataacttctc |
50063368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 290 - 456
Target Start/End: Original strand, 50024351 - 50024513
Alignment:
| Q |
290 |
ccaaaattgaaaccaaacatatgtttattcatactaacttatacattacattataaactaaccattatataagatagcatttttggtgatgtcaaagaaa |
389 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| |||||||||| || | |||||||||||||| || |||||||||||| | |||||||||||| | |
|
|
| T |
50024351 |
ccaaaattaaaaccaaacatatgcttattcatgctaacttataaatga-----taaactaaccattaaattagatagcattttcg-tgatgtcaaagaga |
50024444 |
T |
|
| Q |
390 |
gacg--gtgtattattagattcaattggattctatatttgtaagatttattagactggcataacttctc |
456 |
Q |
| |
|
| | |||||||| || | ||||||||||||||||||||||||||| |||||||| ||||| ||||| |
|
|
| T |
50024445 |
gccatagtgtattactatagtcaattggattctatatttgtaagattgattagactaccataatttctc |
50024513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 290 - 456
Target Start/End: Original strand, 50031469 - 50031631
Alignment:
| Q |
290 |
ccaaaattgaaaccaaacatatgtttattcatactaacttatacattacattataaactaaccattatataagatagcatttttggtgatgtcaaagaaa |
389 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| |||||||||| || | |||||||||||||| || |||||||||||| | |||||||||||| | |
|
|
| T |
50031469 |
ccaaaattaaaaccaaacatatgcttattcatgctaacttataaatga-----taaactaaccattaaattagatagcattttcg-tgatgtcaaagaga |
50031562 |
T |
|
| Q |
390 |
gacg--gtgtattattagattcaattggattctatatttgtaagatttattagactggcataacttctc |
456 |
Q |
| |
|
| | |||||||| || | ||||||||||||||||||||||||||| |||||||| ||||| ||||| |
|
|
| T |
50031563 |
gccatagtgtattactatagtcaattggattctatatttgtaagattgattagactaccataatttctc |
50031631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University