View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20602_high_7 (Length: 304)
Name: NF20602_high_7
Description: NF20602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20602_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 134; Significance: 9e-70; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 112 - 253
Target Start/End: Complemental strand, 2480674 - 2480533
Alignment:
| Q |
112 |
tttacacaggaagagaagggtatggctaggtacatttgagacagcagaggctgcagccagagcatatgatcaagcagccatattgatgaatggaaaaaat |
211 |
Q |
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| T |
2480674 |
tttacacaggaagagaagggtatggctaggtacatttgagacagcagaggctgcagccagagcatatgatcaagcggccatattgatgaatggaaaaaat |
2480575 |
T |
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| Q |
212 |
gccaaaaccaatttccctataccaaaggatcagactgaagat |
253 |
Q |
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| T |
2480574 |
gccaaaaccaatttccctataccaaaggatcaaactgaagat |
2480533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 119 - 228
Target Start/End: Complemental strand, 47101420 - 47101311
Alignment:
| Q |
119 |
aggaagagaagggtatggctaggtacatttgagacagcagaggctgcagccagagcatatgatcaagcagccatattgatgaatggaaaaaatgccaaaa |
218 |
Q |
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| T |
47101420 |
aggaagagaagggtgtggctaggaacatttgaaacagcagaagaagcagcaagagcatatgatcaagctgcgattttaatgagtggtagaaatgccaaaa |
47101321 |
T |
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| Q |
219 |
ccaatttccc |
228 |
Q |
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| T |
47101320 |
caaatttccc |
47101311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 229
Target Start/End: Complemental strand, 2428746 - 2428636
Alignment:
| Q |
119 |
aggaagagaagggtatggctaggtacatttgagacagcagaggctgcagccagagcatatgatcaagcagccatattgatgaatggaaaaaatgccaaaa |
218 |
Q |
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| T |
2428746 |
aggaaaaggagggtttggttaggaacatttgagacagctgaagaagcagctagagcatatgatgaagcagccattctaatgagtggaagaaatgcaaaaa |
2428647 |
T |
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| Q |
219 |
ccaatttccct |
229 |
Q |
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| T |
2428646 |
caaatttccct |
2428636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 189
Target Start/End: Original strand, 1726243 - 1726313
Alignment:
| Q |
119 |
aggaagagaagggtatggctaggtacatttgagacagcagaggctgcagccagagcatatgatcaagcagc |
189 |
Q |
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||||||| ||| ||||| |||| |||||||| |||||||| | |||||| |||||||||||| ||||||| |
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| T |
1726243 |
aggaagacaagaatatggttaggaacatttgaaacagcagaagatgcagcaagagcatatgatgaagcagc |
1726313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 117 - 229
Target Start/End: Original strand, 49532564 - 49532676
Alignment:
| Q |
117 |
acaggaagagaagggtatggctaggtacatttgagacagcagaggctgcagccagagcatatgatcaagcagccatattgatgaatggaaaaaatgccaa |
216 |
Q |
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|||| ||||||||||| ||| |||| ||||||||||| ||||| || ||||| ||||||||||||||||| || || ||||||||||| ||| ||| || |
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| T |
49532564 |
acagaaagagaagggtgtggttaggaacatttgagacggcagaagcagcagcaagagcatatgatcaagctgcaattttgatgaatggtcaaagtgcaaa |
49532663 |
T |
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| Q |
217 |
aaccaatttccct |
229 |
Q |
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| T |
49532664 |
gactaatttccct |
49532676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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