View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20602_low_1 (Length: 576)

Name: NF20602_low_1
Description: NF20602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20602_low_1
NF20602_low_1
[»] chr5 (9 HSPs)
chr5 (293-562)||(41904505-41904773)
chr5 (13-296)||(41904836-41905119)
chr5 (172-292)||(11379243-11379361)
chr5 (172-292)||(11377595-11377713)
chr5 (24-172)||(11379442-11379585)
chr5 (172-292)||(11378420-11378536)
chr5 (24-172)||(11378618-11378761)
chr5 (24-172)||(11377795-11377938)
chr5 (178-292)||(41891348-41891461)
[»] chr2 (2 HSPs)
chr2 (11-172)||(25216135-25216296)
chr2 (172-292)||(25215935-25216054)
[»] chr6 (4 HSPs)
chr6 (24-172)||(22517569-22517717)
chr6 (24-170)||(19804453-19804599)
chr6 (172-292)||(19804682-19804801)
chr6 (172-292)||(22517798-22517917)
[»] chr1 (2 HSPs)
chr1 (11-172)||(26939516-26939678)
chr1 (172-219)||(26941161-26941209)
[»] chr3 (2 HSPs)
chr3 (24-172)||(1194972-1195120)
chr3 (172-292)||(1195201-1195320)


Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 293 - 562
Target Start/End: Complemental strand, 41904773 - 41904505
Alignment:
Q  293 aaaaacacccattctccaacagcaaattcccggtcagtcctatgatggtcagcttggcttttcatatgcgttcaagcatgattcatgtgatgcttgacgc 392  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41904773 aaaaacacccattctccaacagcaaactcccggtcagtcctatgatggtcagcttggcttttcatatgcgttcaagcatgattcatgtgatgcttgacgc 41904674  T
Q  393 agaacactcatccctgttaagaaaatcacttgtcacagcctaaactttagtctctcagggaagaagtctaatcaaaaggggagcaactctaccatacacg 492  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41904673 a-aacactcatccctgttaagaaaatcacttgtcacagcctaaactttagtctctcagggaagaagtctaatcaaaaggggagcaactctaccatacacg 41904575  T
Q  493 gcctcaaatggcgttgtcctgttcgatttggccgtataaggatgcttcagaggcacaaagtgtgcatact 562  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41904574 gcctcaaatggcattgtcctgttcgatttggccgtataaggatgcttcagaggcacaaagtgtgcatact 41904505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 13 - 296
Target Start/End: Complemental strand, 41905119 - 41904836
Alignment:
Q  13 cagagatgggaataaatggattaacttttcttatttccaattaatcaagtggaaataattttctatagaactgtccctttaacaaagattgctagaattt 112  Q
    |||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  41905119 cagagatggggataaatggattaacttgtcttatttgcaattaatcaagtggaaataattttctatagaactgtccctttaacaaagttcgctagaattt 41905020  T
Q  113 tgaccttgaatttgttatgatatatattttaaaaggatagactcataggattttaaaacaattagtaaatcacattattatatcaagactttaatactgt 212  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  41905019 tgaccttgaatttgttatgatccatattttaaaaggatagactcataggattttaaaacaattagtaaatcacattattatatcaagactttaatattgt 41904920  T
Q  213 gtctcgaatcaatcggtctaaatgtttgaactgttcaaaaagggaatgtgttgaaactattcttttccaaggctttagataaaa 296  Q
    ||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41904919 gtctcgaatcaatcactctaaatgtttgaacagttcaaaaagggaatgtgttgaaactattcttttccaaggctttagataaaa 41904836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 172 - 292
Target Start/End: Complemental strand, 11379361 - 11379243
Alignment:
Q  172 aattagtaaatcacattattatatcaagactttaatactgtgtctcgaatcaatcggtctaaatgtttgaactgttcaaaaagggaatgtgttgaaacta 271  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||| |||   |||||||||||| ||||||||    
T  11379361 aattagtaaatcacattattatatgaagactttaatattgtgtctcgaatcaatcagtctaaatgtttgaacagtt--gaaagggaatgtgctgaaacta 11379264  T
Q  272 ttcttttccaaggctttagat 292  Q
    |||||||| ||||||||||||    
T  11379263 ttcttttctaaggctttagat 11379243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 172 - 292
Target Start/End: Complemental strand, 11377713 - 11377595
Alignment:
Q  172 aattagtaaatcacattattatatcaagactttaatactgtgtctcgaatcaatcggtctaaatgtttgaactgttcaaaaagggaatgtgttgaaacta 271  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||| || ||||||||||||| |||   |||||||||||| ||||||||    
T  11377713 aattagtaaatcacattattatatgaagactttaatattgtgtctcgaatcaatcagtttaaatgtttgaacagtt--gaaagggaatgtgctgaaacta 11377616  T
Q  272 ttcttttccaaggctttagat 292  Q
    || ||||| ||||||||||||    
T  11377615 ttattttctaaggctttagat 11377595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 24 - 172
Target Start/End: Complemental strand, 11379585 - 11379442
Alignment:
Q  24 ataaatggattaacttttcttatttccaattaatcaagtggaaataattttctatagaactgtccctttaacaaagattgctagaattttgaccttgaat 123  Q
    |||| ||||||||||| | |||||| |||||||||| |||||||||||||||| |||||||||| ||| ||||||| |||||| |||||| ||||||||     
T  11379585 ataactggattaacttgtattatttgcaattaatcatgtggaaataattttctgtagaactgtcacttgaacaaaggttgctaaaatttttaccttgaaa 11379486  T
Q  124 ttgttatgatatatattttaaaaggatagactcataggattttaaaaca 172  Q
    |     |||   ||||||||||||||||| |||||||||||||||||||    
T  11379485 t-----tgaaccatattttaaaaggatagcctcataggattttaaaaca 11379442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 172 - 292
Target Start/End: Complemental strand, 11378536 - 11378420
Alignment:
Q  172 aattagtaaatcacattattatatcaagactttaatactgtgtctcgaatcaatcggtctaaatgtttgaactgttcaaaaagggaatgtgttgaaacta 271  Q
    |||||||||||||||||||||||| ||||||  |||| | ||||||||||||||| |||||||||||||||| ||| |||  ||||||||| | ||||||    
T  11378536 aattagtaaatcacattattatatgaagact--aatattttgtctcgaatcaatcagtctaaatgtttgaacagttgaaa--gggaatgtgctaaaacta 11378441  T
Q  272 ttcttttccaaggctttagat 292  Q
    |||||||| ||||||||||||    
T  11378440 ttcttttctaaggctttagat 11378420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 24 - 172
Target Start/End: Complemental strand, 11378761 - 11378618
Alignment:
Q  24 ataaatggattaacttttcttatttccaattaatcaagtggaaataattttctatagaactgtccctttaacaaagattgctagaattttgaccttgaat 123  Q
    |||| ||||||||||| | || ||| |||||||||| ||||||||||||||||||||||||||| ||| ||||||| |||||| |||||| ||||||||     
T  11378761 ataactggattaacttgtattttttgcaattaatcatgtggaaataattttctatagaactgtcacttgaacaaaggttgctaaaatttttaccttgaaa 11378662  T
Q  124 ttgttatgatatatattttaaaaggatagactcataggattttaaaaca 172  Q
    |     |||   |||||||| |||||||| |||||||||||||||||||    
T  11378661 t-----tgaaccatattttagaaggatagcctcataggattttaaaaca 11378618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 24 - 172
Target Start/End: Complemental strand, 11377938 - 11377795
Alignment:
Q  24 ataaatggattaacttttcttatttccaattaatcaagtggaaataattttctatagaactgtccctttaacaaagattgctagaattttgaccttgaat 123  Q
    |||| ||||||||||| | |||||| |||||||||| ||||||||||||||||||||||||||| ||| ||||||| |||||| | |||| ||||||||     
T  11377938 ataactggattaacttgtattatttgcaattaatcatgtggaaataattttctatagaactgtcacttgaacaaaggttgctaaagtttttaccttgaaa 11377839  T
Q  124 ttgttatgatatatattttaaaaggatagactcataggattttaaaaca 172  Q
    |     |||   |||||||| |||||||| |||||| ||||||||||||    
T  11377838 t-----tgaaccatattttagaaggatagcctcatatgattttaaaaca 11377795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 178 - 292
Target Start/End: Complemental strand, 41891461 - 41891348
Alignment:
Q  178 taaatcacattattatatca-agactttaatactgtgtctcgaatcaatcggtctaaatgtttgaactgttcaaaaagggaatgtgttgaaactattctt 276  Q
    |||||| ||||||||||||  ||||||||||  | ||  |||||||||||  ||||||||| |||| |||| |||  ||||| | |||| || |||||||    
T  41891461 taaatctcattattatatctcagactttaatgttatggttcgaatcaatcaatctaaatgtgtgaaatgttgaaa--gggaaggagttggaattattctt 41891364  T
Q  277 ttccaaggctttagat 292  Q
    ||||||| ||||||||    
T  41891363 ttccaagactttagat 41891348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 11 - 172
Target Start/End: Complemental strand, 25216296 - 25216135
Alignment:
Q  11 cacagagatgggaataaatggattaacttttcttatttccaattaatcaagtggaaataattttctatagaactgtccctttaacaaagattgctagaat 110  Q
    ||||||||| || ||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||    
T  25216296 cacagagatagggataaatggattaacttggcttatttgcaattaatcaagtggaaataattttctatagaactgtcacttgaacaaaggttgctagaat 25216197  T
Q  111 tttgaccttgaatttgttatgatatatattttaaaaggatagactcataggattttaaaaca 172  Q
    |||||||| ||| |||| ||||   ||||||||||||||||| |||||||||||||||||||    
T  25216196 tttgacctggaaattgtcatgaaccatattttaaaaggatagcctcataggattttaaaaca 25216135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 172 - 292
Target Start/End: Complemental strand, 25216054 - 25215935
Alignment:
Q  172 aattagtaaatcacattattatatcaag-actttaatactgtgtctcgaatcaatcggtctaaatgtttgaactgttcaaaaagggaatgtgttgaaact 270  Q
    |||||||||||||||||||||||| ||  ||||||||| ||||||||||||||||  |||||||||||||| | ||| |||  ||||||||| |||||||    
T  25216054 aattagtaaatcacattattatatgaaatactttaatattgtgtctcgaatcaataagtctaaatgtttgatccgttgaaa--gggaatgtgctgaaact 25215957  T
Q  271 attcttttccaaggctttagat 292  Q
    ||||||||||||| ||||||||    
T  25215956 attcttttccaagactttagat 25215935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 5e-45; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 24 - 172
Target Start/End: Original strand, 22517569 - 22517717
Alignment:
Q  24 ataaatggattaacttttcttatttccaattaatcaagtggaaataattttctatagaactgtccctttaacaaagattgctagaattttgaccttgaat 123  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||| ||| ||| ||| ||||||||||||||||||||||     
T  22517569 ataaatggattaacttgtcttatttgcaattaatcaagtggaaataattttccatagaactgtcacttgaactaaggttgctagaattttgaccttgaaa 22517668  T
Q  124 ttgttatgatatatattttaaaaggatagactcataggattttaaaaca 172  Q
    |||| ||||   ||||| ||||||||||| |||||||||||||||||||    
T  22517669 ttgtcatgaaccatattataaaaggatagcctcataggattttaaaaca 22517717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 24 - 170
Target Start/End: Original strand, 19804453 - 19804599
Alignment:
Q  24 ataaatggattaacttttcttatttccaattaatcaagtggaaataattttctatagaactgtccctttaacaaagattgctagaattttgaccttgaat 123  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||| || ||| ||| ||  ||||||||||||||||||||||     
T  19804453 ataaatggattaacttgtcttatttacaattaatcaagtggaaataattttccatagaactatcacttgaactaaagttgctagaattttgaccttgaaa 19804552  T
Q  124 ttgttatgatatatattttaaaaggatagactcataggattttaaaa 170  Q
    |||| ||||   ||||||||||||||||| |||||||||| ||||||    
T  19804553 ttgtcatgaaccatattttaaaaggatagcctcataggatattaaaa 19804599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 172 - 292
Target Start/End: Original strand, 19804682 - 19804801
Alignment:
Q  172 aattagtaaatcacattattatatcaa-gactttaatactgtgtctcgaatcaatcggtctaaatgtttgaactgttcaaaaagggaatgtgttgaaact 270  Q
    |||||||||||||||||||||||| || |||||||||| |||||||| |||||||| ||||||||||||||||||||   |||||||||||| |||| ||    
T  19804682 aattagtaaatcacattattatatgaaagactttaatattgtgtctcaaatcaatcagtctaaatgtttgaactgtt--gaaagggaatgtgctgaagct 19804779  T
Q  271 attcttttccaaggctttagat 292  Q
    ||| ||||||||||||||||||    
T  19804780 attattttccaaggctttagat 19804801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 172 - 292
Target Start/End: Original strand, 22517798 - 22517917
Alignment:
Q  172 aattagtaaatcacattattatatcaa-gactttaatactgtgtctcgaatcaatcggtctaaatgtttgaactgttcaaaaagggaatgtgttgaaact 270  Q
    |||||||||||||||||||||||| || |||||||||| ||||||||||||||||   | ||||||||||||||||| |||  |||||||||||||| ||    
T  22517798 aattagtaaatcacattattatatgaaagactttaatattgtgtctcgaatcaatgaatttaaatgtttgaactgttgaaa--gggaatgtgttgaagct 22517895  T
Q  271 attcttttccaaggctttagat 292  Q
    ||||||||||||||||||||||    
T  22517896 attcttttccaaggctttagat 22517917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 8e-44; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 11 - 172
Target Start/End: Original strand, 26939516 - 26939678
Alignment:
Q  11 cacagagatg-ggaataaatggattaacttttcttatttccaattaatcaagtggaaataattttctatagaactgtccctttaacaaagattgctagaa 109  Q
    |||||||||| || ||||||||||| || | |||||||| ||||||||| |||||||||||||||||||||||||||| ||| ||||||| |||||||||    
T  26939516 cacagagatgagggataaatggattgacctgtcttatttgcaattaatctagtggaaataattttctatagaactgtcgcttgaacaaaggttgctagaa 26939615  T
Q  110 ttttgaccttgaatttgttatgatatatattttaaaaggatagactcataggattttaaaaca 172  Q
    |||||| |||||| |||| ||||   ||||||||||||||||| |||||||||||||||||||    
T  26939616 ttttgatcttgaaattgtcatgaaccatattttaaaaggatagcctcataggattttaaaaca 26939678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 26941161 - 26941209
Alignment:
Q  172 aattagtaaatcacattattatat-caagactttaatactgtgtctcga 219  Q
    ||||||||||||||||||||||||  ||||||||| || ||||||||||    
T  26941161 aattagtaaatcacattattatatgaaagactttagtattgtgtctcga 26941209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 8e-38; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 24 - 172
Target Start/End: Original strand, 1194972 - 1195120
Alignment:
Q  24 ataaatggattaacttttcttatttccaattaatcaagtggaaataattttctatagaactgtccctttaacaaagattgctagaattttgaccttgaat 123  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||| ||| ||||||| ||| ||| ||  ||||||||||||||||||||||     
T  1194972 ataaatggattaacttgtcttatttacaattaatcaagtggaaataattttccataaaactgtcacttgaactaaagttgctagaattttgaccttgaaa 1195071  T
Q  124 ttgttatgatatatattttaaaaggatagactcataggattttaaaaca 172  Q
    |||| ||||   |||||||| |||||||| |||||||||| ||||||||    
T  1195072 ttgtcatgaaccatattttacaaggatagcctcataggatattaaaaca 1195120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 172 - 292
Target Start/End: Original strand, 1195201 - 1195320
Alignment:
Q  172 aattagtaaatcacattattatatcaa-gactttaatactgtgtctcgaatcaatcggtctaaatgtttgaactgttcaaaaagggaatgtgttgaaact 270  Q
    |||||||||||||||||||||||| || |||||||||| |||||||| |||||||| ||||||||||||||||||||   ||||||||||||||||| ||    
T  1195201 aattagtaaatcacattattatatgaaagactttaatattgtgtctcaaatcaatcagtctaaatgtttgaactgtt--gaaagggaatgtgttgaagct 1195298  T
Q  271 attcttttccaaggctttagat 292  Q
    ||| ||||||||||||||||||    
T  1195299 attattttccaaggctttagat 1195320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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