View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20602_low_10 (Length: 267)
Name: NF20602_low_10
Description: NF20602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20602_low_10 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 267
Target Start/End: Original strand, 2480188 - 2480442
Alignment:
| Q |
13 |
aatatcctcttcatgttctatcccatttttctcagcacaatcaccaacaattgtactattattaggtgctgatttttctgatgatgacacataatttgat |
112 |
Q |
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| T |
2480188 |
aatatcctcttcatgttctatcccatttttctcagcacaatcaccaacaattgtactattattaggtgctgatttttctgatgatgacacataatttgat |
2480287 |
T |
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| Q |
113 |
tcatgactatcttcatgnnnnnnnccaagctccacccttaagatccaattagagtcagaatgtgatcctgctcctttttgccagactcctatgtgagaat |
212 |
Q |
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| T |
2480288 |
tcatgactatcttcatgtttctttccaagctccacccttaagatccaattagagtcagaatgtgatcctgctcctttttgccagactcctatgtgagaat |
2480387 |
T |
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| Q |
213 |
tatcagcatcaagcctcaaacaagtgagtgattgagattgtttttgacaacattt |
267 |
Q |
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| T |
2480388 |
tatcagcatcaagcctcaaacaagtgagtgattgagattgtttttgacaacattt |
2480442 |
T |
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Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 157 - 249
Target Start/End: Complemental strand, 49532904 - 49532812
Alignment:
| Q |
157 |
ccaattagagtcagaatgtgatcctgctcctttttgccagactcctatgtgagaattatcagcatcaagcctcaaacaagtgagtgattgaga |
249 |
Q |
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| T |
49532904 |
ccaattagaatcagaatgtggtccagctcttttttgccacactccaatgtgagaattatcattatctagcctcaaacaagtaagtgatggaga |
49532812 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 243
Target Start/End: Original strand, 44648467 - 44648531
Alignment:
| Q |
179 |
cctgctcctttttgccagactcctatgtgagaattatcagcatcaagcctcaaacaagtgagtga |
243 |
Q |
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| T |
44648467 |
cctgcacctttctgccacactccaatgtgtgaattctctgcatcaagcctcagacaagtgagtga |
44648531 |
T |
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