View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20602_low_13 (Length: 237)
Name: NF20602_low_13
Description: NF20602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20602_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 2790406 - 2790186
Alignment:
| Q |
1 |
tagtctagaatcaactatttaaaaagttgattaaacccatcaccatgtcttaaccattcaannnnnnncttgataatgaaacgacccaaaatatggtcca |
100 |
Q |
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| T |
2790406 |
tagtctagaatcaactatttaaaaagttgattaaacccatcaccatgtcttaaccattcaatttttttcttgataatgaaacgacccaaaatatggtcca |
2790307 |
T |
|
| Q |
101 |
taaaacaatcaatgcatgaagagaatcaatatacttatcatcattcnnnnnnnggtagaacaatatatttatcattaatctacaataatagaagaatgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2790306 |
taaaacaatcaatgcatgaagagaatcaatatacttatcatcattctttttttggtagaacaatacatttatcattaatctacaataatagaagaatgaa |
2790207 |
T |
|
| Q |
201 |
acataatatgcgacaagtaat |
221 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
2790206 |
acataatatgcgacaagtaat |
2790186 |
T |
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