View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20602_low_3 (Length: 546)
Name: NF20602_low_3
Description: NF20602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20602_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 18 - 540
Target Start/End: Original strand, 9495957 - 9496493
Alignment:
| Q |
18 |
aacctctatgtatcagaggaagagtatgactttcatgctgtttctggtatagattataatcaatactttggtggcggtgtaatgtactggaacccttctg |
117 |
Q |
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| T |
9495957 |
aacctctatgtatcagaggaagagtatgactttcatgctgtttctggtatagattataatcaatactttggtggcggtgtaatgtactggaacccttctg |
9496056 |
T |
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| Q |
118 |
aaaatccaggaaaaggtttttctcggcctccctctctcagctctgatgacagtttatgggctttgcgtgaagctgacatgaataggacagtggatgatat |
217 |
Q |
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| T |
9496057 |
aaaatccaggaaaaggtttttctcggcctccctctctcagctctgatgacagtttatgggctttgcgtgaagctgacatgaataggacagtggatgatat |
9496156 |
T |
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| Q |
218 |
ggttgctttctcttcttcatatagtacaaatggtttagcatctccaacagctgcaacattttgctctccctttgatcctgtagggactg----------- |
306 |
Q |
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| T |
9496157 |
ggttgctttctcttcttcatatagtacaaatggtttagcatctccaacagctgcaacattttgctctccctttgatcctgtagggactgggacccagact |
9496256 |
T |
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| Q |
307 |
---ggttatgtaatgtctggtaatgatgtacctgggaaagtgttgcattcttcatcagttacagatgcagcagtggatgatgatgcttctagttctttgg |
403 |
Q |
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| T |
9496257 |
gttggttatgtaatgtctggtaatgatgtacctgggaaagtgttgcattcttcatcagttacagattcagcagtggatgatgatgcttctagttctttgg |
9496356 |
T |
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| Q |
404 |
gtaataacttacctggagaaattgaagggaaggctggtgattcacatacatatccaattctaaggccaataattattcctaacttgtctagggaaaggtc |
503 |
Q |
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| T |
9496357 |
gtaataacttacctggagaaattgaagggaaggctggtgattcacatccatatccaattctaaggccaataattattcctaacttgtctagggaaaggtc |
9496456 |
T |
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| Q |
504 |
tatatgtgttgatcataaaagcctctgtgctcctcct |
540 |
Q |
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| T |
9496457 |
tatatgtgttgatcataaaagcccttgtgttcctcct |
9496493 |
T |
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