View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20602_low_5 (Length: 353)
Name: NF20602_low_5
Description: NF20602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20602_low_5 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 20 - 342
Target Start/End: Complemental strand, 4135370 - 4135046
Alignment:
| Q |
20 |
tcgtaactcatgaagacatgtcttgtttatttcaaatatataaaactgatctcaattggaaggtttgtttctaccggtggagttttaggtttaagaattg |
119 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4135370 |
tcgtaactcatgaaaacatgtcttgtttatttcaaatatataaaactgatctcaattggaaggtttgtttctaccggtggagttttaggtttaagaattg |
4135271 |
T |
|
| Q |
120 |
actttctaagatgttatcggtttggtgcatgatctatggatatatata--atcaattttatggttttgataaaatgaaaatcctttgaatttaattgaat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4135270 |
actttctaagatgttatcggtttggtgcatgatctatggatatatatataatcaattttatggttttgataaaatggaaatcctttgaatttaattgaat |
4135171 |
T |
|
| Q |
218 |
tggtaatcgattctcgatgataaacaaattcagaattgttgtggctgtgccatcttaagtgatctgtgaaaattcagaattgttttggcttccattgttg |
317 |
Q |
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|
||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4135170 |
tggtaatcgattctcgatgataaacaaattccgaattgttgtggttgtgccatcttaagtgatctgtgaaaattcagaattgttttggcttccattgttg |
4135071 |
T |
|
| Q |
318 |
cctttaggttcagacttttcttctt |
342 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
4135070 |
cctttaggttcagacttttcttctt |
4135046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 170 - 266
Target Start/End: Complemental strand, 22420029 - 22419933
Alignment:
| Q |
170 |
caattttatggttttgataaaatgaaaatcctttgaatttaattgaattggtaatcgattctcgatgataaacaaattcagaattgttgtggctgtg |
266 |
Q |
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|||||||||||||||| ||||||||||||||||| |||||||||||||||||| || |||||| |||||||||||| |||||| |||||||||||| |
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| T |
22420029 |
caattttatggttttggtaaaatgaaaatcctttaaatttaattgaattggtagtcaattctccgtgataaacaaatccagaatcgttgtggctgtg |
22419933 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 22420258 - 22420206
Alignment:
| Q |
27 |
tcatgaagacatgtcttgtttatttcaaatatataaaactgatctcaattgga |
79 |
Q |
| |
|
|||||||||||| |||||||||| |||||| ||||||| |||||||||||||| |
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|
| T |
22420258 |
tcatgaagacatttcttgtttatgtcaaatttataaaattgatctcaattgga |
22420206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 149
Target Start/End: Complemental strand, 22420174 - 22420106
Alignment:
| Q |
81 |
ggtttgtttctaccggtggagttttaggtttaagaattgactttctaagatgttatcggtttggtgcat |
149 |
Q |
| |
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||||| |||||||| ||||| |||||||| | |||||||||||||| | ||||| || |||||||||| |
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|
| T |
22420174 |
ggtttatttctaccagtggaattttaggtgtgagaattgactttctgaaatgttgtccatttggtgcat |
22420106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 342
Target Start/End: Complemental strand, 23706624 - 23706283
Alignment:
| Q |
18 |
aatcgtaactcatgaagacatgtcttgtttatttcaaatatataaaactgatctcaattggaaggtttgtttctaccggtggagttttaggtttaagaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23706624 |
aatcgtaactcatgaagacatgtcttgtttatttcaaatatataaaactgatctcaattggaaggtttgtttctaccggtggagttttaggtttaagaat |
23706525 |
T |
|
| Q |
118 |
tgactttctaagatgttatcggtttggtgcat----------------gatctatggatatatataatcaattttatggttttgataaaatgaaaatcct |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
23706524 |
tgactttctaagatgttatcggtttggtgcattatctgccttgtgcatgatctatggatatatataatcaattttatggttttgataaaatggaaatcct |
23706425 |
T |
|
| Q |
202 |
ttgaatttaattgaattggtaatcgattctcgatgataaacaaattcagaattgttgtggctgtgccat-cttaagtgatctgtgaaaattcagaattgt |
300 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
23706424 |
ttgaatttaattgaattggtaattgattctccatgataaacaaatgcagaattgttgtagctgtgccatccttaagtgatctgtgaaaattcagaattgt |
23706325 |
T |
|
| Q |
301 |
tttggcttccattgttgcctttaggttcagacttttcttctt |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23706324 |
tttggcttccattgttgcctttaggttcagacttttcttctt |
23706283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 342
Target Start/End: Complemental strand, 23725080 - 23724739
Alignment:
| Q |
18 |
aatcgtaactcatgaagacatgtcttgtttatttcaaatatataaaactgatctcaattggaaggtttgtttctaccggtggagttttaggtttaagaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23725080 |
aatcgtaactcatgaagacatgtcttgtttatttcaaatatataaaactgatctcaattggaaggtttgtttctaccggtggagttttaggtttaagaat |
23724981 |
T |
|
| Q |
118 |
tgactttctaagatgttatcggtttggtgcat----------------gatctatggatatatataatcaattttatggttttgataaaatgaaaatcct |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
23724980 |
tgactttctaagatgttatcggtttggtgcattatctgccttgtgcatgatctatggatatatataatcaattttatggttttgataaaatggaaatcct |
23724881 |
T |
|
| Q |
202 |
ttgaatttaattgaattggtaatcgattctcgatgataaacaaattcagaattgttgtggctgtgccat-cttaagtgatctgtgaaaattcagaattgt |
300 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
23724880 |
ttgaatttaattgaattggtaattgattctccatgataaacaaatgcagaattgttgtagctgtgccatccttaagtgatctgtgaaaattcagaattgt |
23724781 |
T |
|
| Q |
301 |
tttggcttccattgttgcctttaggttcagacttttcttctt |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23724780 |
tttggcttccattgttgcctttaggttcagacttttcttctt |
23724739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 342
Target Start/End: Complemental strand, 23743536 - 23743195
Alignment:
| Q |
18 |
aatcgtaactcatgaagacatgtcttgtttatttcaaatatataaaactgatctcaattggaaggtttgtttctaccggtggagttttaggtttaagaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23743536 |
aatcgtaactcatgaagacatgtcttgtttatttcaaatatataaaactgatctcaattggaaggtttgtttctaccggtggagttttaggtttaagaat |
23743437 |
T |
|
| Q |
118 |
tgactttctaagatgttatcggtttggtgcat----------------gatctatggatatatataatcaattttatggttttgataaaatgaaaatcct |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
23743436 |
tgactttctaagatgttatcggtttggtgcattatctgccttgtgcatgatctatggatatatataatcaattttatggttttgataaaatggaaatcct |
23743337 |
T |
|
| Q |
202 |
ttgaatttaattgaattggtaatcgattctcgatgataaacaaattcagaattgttgtggctgtgccat-cttaagtgatctgtgaaaattcagaattgt |
300 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
23743336 |
ttgaatttaattgaattggtaattgattctccatgataaacaaatgcagaattgttgtagctgtgccatccttaagtgatctgtgaaaattcagaattgt |
23743237 |
T |
|
| Q |
301 |
tttggcttccattgttgcctttaggttcagacttttcttctt |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23743236 |
tttggcttccattgttgcctttaggttcagacttttcttctt |
23743195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 342
Target Start/End: Complemental strand, 23773081 - 23772740
Alignment:
| Q |
18 |
aatcgtaactcatgaagacatgtcttgtttatttcaaatatataaaactgatctcaattggaaggtttgtttctaccggtggagttttaggtttaagaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23773081 |
aatcgtaactcatgaagacatgtcttgtttatttcaaatatataaaactgatctcaattggaaggtttgtttctaccggtggagttttaggtttaagaat |
23772982 |
T |
|
| Q |
118 |
tgactttctaagatgttatcggtttggtgcat----------------gatctatggatatatataatcaattttatggttttgataaaatgaaaatcct |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
23772981 |
tgactttctaagatgttatcggtttggtgcattatctgccttgtgcatgatctatggatatatataatcaattttatggttttgataaaatggaaatcct |
23772882 |
T |
|
| Q |
202 |
ttgaatttaattgaattggtaatcgattctcgatgataaacaaattcagaattgttgtggctgtgccat-cttaagtgatctgtgaaaattcagaattgt |
300 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
23772881 |
ttgaatttaattgaattggtaattgattctccatgataaacaaatgcagaattgttgtagctgtgccatccttaagtgatctgtgaaaattcagaattgt |
23772782 |
T |
|
| Q |
301 |
tttggcttccattgttgcctttaggttcagacttttcttctt |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23772781 |
tttggcttccattgttgcctttaggttcagacttttcttctt |
23772740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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