View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20603_high_7 (Length: 210)
Name: NF20603_high_7
Description: NF20603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20603_high_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 48451756 - 48451610
Alignment:
| Q |
1 |
ggcgatgtcatctcatctggttggataatgaatatttttcccagtggtgtgtacaatagcttctgaaaatatccaaagaaagtaaattaaatggtcaaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48451756 |
ggcgatgtcatctcatctggttggataatgaatatttttcccagtggtgtgtacaatagcttctgaaaatatccaaagaaagtaaattaaatggtcaaga |
48451657 |
T |
|
| Q |
101 |
gaagaaaattaacacattaatagtcaaacataatttcaatctgagtg |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48451656 |
aaagaaaattaacacattaatagtcaaacataatttcaatctgagtg |
48451610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 48451875 - 48451924
Alignment:
| Q |
144 |
agtgatccaacagcatatggagcagaaggcacaattctaagagaccatga |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48451875 |
agtgatccaacagcatatggagcagaaggcacaattctaagagaccatga |
48451924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University