View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20603_low_1 (Length: 837)

Name: NF20603_low_1
Description: NF20603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20603_low_1
NF20603_low_1
[»] chr1 (5 HSPs)
chr1 (348-672)||(24142768-24143086)
chr1 (1-317)||(24142419-24142735)
chr1 (741-818)||(24143155-24143234)
chr1 (486-539)||(40974721-40974774)
chr1 (583-632)||(40974621-40974670)
[»] chr2 (3 HSPs)
chr2 (107-187)||(20625647-20625727)
chr2 (252-317)||(16362888-16362953)
chr2 (131-173)||(16363037-16363079)
[»] scaffold0391 (1 HSPs)
scaffold0391 (105-211)||(604-711)
[»] chr6 (6 HSPs)
chr6 (263-317)||(9030704-9030758)
chr6 (131-187)||(1771900-1771956)
chr6 (486-573)||(1771499-1771586)
chr6 (252-307)||(1771775-1771830)
chr6 (360-447)||(9030477-9030564)
chr6 (267-317)||(9030630-9030680)
[»] chr7 (2 HSPs)
chr7 (253-302)||(42229445-42229494)
chr7 (126-169)||(42229583-42229626)


Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 348 - 672
Target Start/End: Original strand, 24142768 - 24143086
Alignment:
Q  348 tgtagaatcttaccacatgaagatggtattgggtgagcacaaacacgtcattcaggccaccatgatagtcatgaagctgttgaggctccacctccacctc 447  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  24142768 tgtagaatcttaccacatgaagatggtattgggtgagcacaaacacgtcatttaggccaccatgatagtcatgaagctgttgaggctccacctccacctc 24142867  T
Q  448 gacctgcggctgctcatcaacatcatctgtgttctccacctcctcctcctccatatggtgcttctcgggctgcgtctcaggctcgtgcaccttaggcgca 547  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24142868 gacctgcggctgctcatcaacatcatctgtgttctccacctcctcctcctccatatggtgcttctcgggctgcgtctcaggctcgtgcaccttaggcgca 24142967  T
Q  548 gggtcagcaaggcggccccttcccctgcccatgcccctatgcactctcccttccgctacattcctctcaaactgctctcgcttggcagaaacaatcatga 647  Q
    |||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24142968 gggtcagcaaggcgg------cccctgcccatgcccctatgcactctcccttccgctacattcctctcaaactgctctcgcttggcagaaacaatcatga 24143061  T
Q  648 aaggtatgttgttcctaaggcgatt 672  Q
    |||||||||||||||||||||||||    
T  24143062 aaggtatgttgttcctaaggcgatt 24143086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 262; E-Value: 1e-145
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 24142419 - 24142735
Alignment:
Q  1 gttattgtcatctccctaattggaagattgaagttagacgcttcctcgttccatctcccaacaaaagtagataaaaaatcgtggtaaaggataggataac 100  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24142419 gttattgtcatctccctaattggaagattgaagttagacacctcctcgttccatctcccaacaaaagtagataaaaaatcgtggtaaaggataggataac 24142518  T
Q  101 tgactgtagccactgaagtccaccggctcacatggcatttttgaaccatcactcttgcatcctatccaaatttagttcttgtatagcagtagcttttttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24142519 tgactgtagccactgaagtccaccggctcacatggcatttttgaaccatcactcttgcatcctatccaaatttagttcttgtatagcagtagcttttttc 24142618  T
Q  201 cgttattcacattaagttgacacgccactgcagaaatgnnnnnnnnnnnnnttaatatcatgatacgattcactttagtttacacaaataaaaataaaca 300  Q
    ||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  24142619 cgttattcacattaagttgacacgccactgcagaaatgaaaaaacaaaaaattaatatcatgatacgattcacgttagtttacacaaataaaaataaaca 24142718  T
Q  301 tagccttcagattacat 317  Q
    |||||||||| ||||||    
T  24142719 tagccttcagcttacat 24142735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 741 - 818
Target Start/End: Original strand, 24143155 - 24143234
Alignment:
Q  741 agatatttttgcagttcagattttatttaccgaaccatgcacaatccagttcg--aaatatagttcgaacaggttcagtg 818  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  24143155 agatatttttgcagttcagattttatttaccgaaccatgcacaatccagttcgaaaaatatagttcgaacaggttcagtg 24143234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 486 - 539
Target Start/End: Complemental strand, 40974774 - 40974721
Alignment:
Q  486 cctcctcctcctccatatggtgcttctcgggctgcgtctcaggctcgtgcacct 539  Q
    ||||||||||||||||||||| |||||||||||| | ||||||||||| |||||    
T  40974774 cctcctcctcctccatatggtacttctcgggctggggctcaggctcgttcacct 40974721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 583 - 632
Target Start/End: Complemental strand, 40974670 - 40974621
Alignment:
Q  583 cctatgcactctcccttccgctacattcctctcaaactgctctcgcttgg 632  Q
    ||||||||||||||||||||||||||| ||||| ||| | ||||||||||    
T  40974670 cctatgcactctcccttccgctacatttctctccaaccgttctcgcttgg 40974621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 107 - 187
Target Start/End: Complemental strand, 20625727 - 20625647
Alignment:
Q  107 tagccactgaagtccaccggctcacatggcatttttgaaccatcactcttgcatcctatccaaatttagttcttgtatagc 187  Q
    ||||||||||||||||  || ||||||||| | ||||||||||| ||||||||||||||||| || | |||||||||||||    
T  20625727 tagccactgaagtccattggatcacatggcctctttgaaccatcgctcttgcatcctatccacatctggttcttgtatagc 20625647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 252 - 317
Target Start/End: Complemental strand, 16362953 - 16362888
Alignment:
Q  252 ttaatatcatgatacgattcactttagtttacacaaataaaaataaacatagccttcagattacat 317  Q
    |||||||||||||| |||||| || |||||||| |||||||||||| |||||| ||||| ||||||    
T  16362953 ttaatatcatgatatgattcaattcagtttacataaataaaaataatcatagcattcagtttacat 16362888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 173
Target Start/End: Complemental strand, 16363079 - 16363037
Alignment:
Q  131 catggcatttttgaaccatcactcttgcatcctatccaaattt 173  Q
    |||||||| |||||||||||| |||||||| ||||||||||||    
T  16363079 catggcatctttgaaccatcattcttgcatgctatccaaattt 16363037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 211
Target Start/End: Original strand, 604 - 711
Alignment:
Q  105 tgtagccactgaagtccaccggctcacatggcatttttgaaccatcactcttgcatcctatccaaatttagttcttgtatag-cagtagcttttttccgt 203  Q
    |||||||| ||||||||||   ||| |||| ||| ||||| ||||  |||||||||||||||||||| | |||||||||||| |||||||||||| ||||    
T  604 tgtagccattgaagtccacttactcgcatgacatctttgacccattgctcttgcatcctatccaaatgtggttcttgtatagccagtagctttttgccgt 703  T
Q  204 tattcaca 211  Q
    | ||||||    
T  704 tgttcaca 711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 263 - 317
Target Start/End: Complemental strand, 9030758 - 9030704
Alignment:
Q  263 atacgattcactttagtttacacaaataaaaataaacatagccttcagattacat 317  Q
    |||||||||| |  |||||||| ||||||||||||||||||||||||| ||||||    
T  9030758 atacgattcaatccagtttacaaaaataaaaataaacatagccttcagcttacat 9030704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 1771956 - 1771900
Alignment:
Q  131 catggcatttttgaaccatcactcttgcatcctatccaaatttagttcttgtatagc 187  Q
    |||||||| |||||| |||| ||||||||||||||||||||||   |||||||||||    
T  1771956 catggcatctttgaatcatcgctcttgcatcctatccaaatttgactcttgtatagc 1771900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 486 - 573
Target Start/End: Complemental strand, 1771586 - 1771499
Alignment:
Q  486 cctcctcctcctccatatggtgcttctcgggctgcgtctcaggctcgtgcaccttaggcgcagggtcagcaaggcggccccttcccct 573  Q
    ||||||||||||||||||  |  | ||||||||| | ||||||||||| |||||||||| |||  |||| | ||||| ||||||||||    
T  1771586 cctcctcctcctccatataatattgctcgggctggggctcaggctcgtacaccttaggctcagactcagaacggcggtcccttcccct 1771499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 252 - 307
Target Start/End: Complemental strand, 1771830 - 1771775
Alignment:
Q  252 ttaatatcatgatacgattcactttagtttacacaaataaaaataaacatagcctt 307  Q
    |||||||||||| |||||||| ||||||||||  | |||||| |||||||||||||    
T  1771830 ttaatatcatgacacgattcagtttagtttacttatataaaattaaacatagcctt 1771775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 447
Target Start/End: Complemental strand, 9030564 - 9030477
Alignment:
Q  360 ccacatgaagatggtattgggtgagcacaaacacgtcattcaggccaccatgatagtcatgaagctgttgaggctccacctccacctc 447  Q
    ||||||||||||||||||||||||||||| ||| ||||     |||| || |||| ||||  ||| |||| |||||||||||||||||    
T  9030564 ccacatgaagatggtattgggtgagcacagacaagtcacgtgcgccatcaagatattcatttagcggttgtggctccacctccacctc 9030477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 267 - 317
Target Start/End: Complemental strand, 9030680 - 9030630
Alignment:
Q  267 gattcactttagtttacacaaataaaaataaacatagccttcagattacat 317  Q
    |||||| || |||||||| ||||||||||||||||| ||||||| ||||||    
T  9030680 gattcaattcagtttacataaataaaaataaacataaccttcagtttacat 9030630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 253 - 302
Target Start/End: Complemental strand, 42229494 - 42229445
Alignment:
Q  253 taatatcatgatacgattcactttagtttacacaaataaaaataaacata 302  Q
    ||||| |||||||||||||| || |||||||| |||||||||||||||||    
T  42229494 taatagcatgatacgattcagttaagtttacataaataaaaataaacata 42229445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 169
Target Start/End: Complemental strand, 42229626 - 42229583
Alignment:
Q  126 gctcacatggcatttttgaaccatcactcttgcatcctatccaa 169  Q
    |||||| ||| || ||||||||||||||||||||||||||||||    
T  42229626 gctcacgtggtatctttgaaccatcactcttgcatcctatccaa 42229583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University