View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20603_low_4 (Length: 337)
Name: NF20603_low_4
Description: NF20603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20603_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 7 - 328
Target Start/End: Original strand, 16251919 - 16252240
Alignment:
| Q |
7 |
cttcttttcatccattttacgtttcattgaatgttttctcttcaaagcaataacaggtgaacactcattatcattagacaacaaataattcatgtcccta |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16251919 |
cttcttttcatccattttacgtttcattgaatgttttctcttcaaagcaataacaggtgaacactcattatcattagacaacaaataattcatgtcccta |
16252018 |
T |
|
| Q |
107 |
agtgattccttaaccttttcaactgaaaaattaagtgttgcagatgaacctctcattgaaaaagcagcttgatcataagctagtgctgctgcttcagcac |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16252019 |
agtgattccttaaccttttcaactgaaaaattaagtgttgcagatgaacctctcattgaaaaagcagcttgatcataagctagtgctgctgcttcagcac |
16252118 |
T |
|
| Q |
207 |
tatcaaatgttcctaaccatacccttatgccatgtctagttgaatcccttatttctgctgcaaatttcccccatggtctacgtcgaacgccacgataaga |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16252119 |
tatcaaatgttcctaaccatacccttatgccatgtctagttgaatcccttatttctgctgcaaatttcccccatggtctacgtcgaacgccacgataaga |
16252218 |
T |
|
| Q |
307 |
cttattattcttatctttgttg |
328 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
16252219 |
cttattattcttatctttgttg |
16252240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 133 - 285
Target Start/End: Complemental strand, 33042699 - 33042547
Alignment:
| Q |
133 |
aaaattaagtgttgcagatgaacctctcattgaaaaagcagcttgatcataagctagtgctgctgcttcagcactatcaaatgttcctaaccataccctt |
232 |
Q |
| |
|
|||||| ||| ||||||| ||||||||||| |||||||| |||||||||||||| | || || ||||| ||||||||||| ||||||| ||| ||||| |
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| T |
33042699 |
aaaattgagtattgcagaagaacctctcatggaaaaagctgcttgatcataagccaaagcagcagcttctgcactatcaaaggttcctagccacaccctc |
33042600 |
T |
|
| Q |
233 |
atgccatgtctagttgaatcccttatttctgctgcaaatttcccccatggtct |
285 |
Q |
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|| |||| || || ||||| ||||| |||||||||||||||||||||||||| |
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| T |
33042599 |
attccattcctcgtcgaatctcttatctctgctgcaaatttcccccatggtct |
33042547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 154 - 285
Target Start/End: Original strand, 30656658 - 30656789
Alignment:
| Q |
154 |
acctctcattgaaaaagcagcttgatcataagctagtgctgctgcttcagcactatcaaatgttcctaaccatacccttatgccatgtctagttgaatcc |
253 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| || || |||||||||||||||||||||||||||| |||||| ||||| || |||| ||| |
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| T |
30656658 |
acctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttcctaaccaaacccttttgccaccccttgttgtgtcc |
30656757 |
T |
|
| Q |
254 |
cttatttctgctgcaaatttcccccatggtct |
285 |
Q |
| |
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||||||||||| ||| |||||||||| ||||| |
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|
| T |
30656758 |
cttatttctgcagcatatttcccccaaggtct |
30656789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 153 - 285
Target Start/End: Original strand, 30718756 - 30718888
Alignment:
| Q |
153 |
aacctctcattgaaaaagcagcttgatcataagctagtgctgctgcttcagcactatcaaatgttcctaaccatacccttatgccatgtctagttgaatc |
252 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| || || |||||||||||||||||||||| | ||| |||||| | || ||| |||| ||| |
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| T |
30718756 |
aacctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttccaagccaaacccttcttcctcctcttgttgtatc |
30718855 |
T |
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| Q |
253 |
ccttatttctgctgcaaatttcccccatggtct |
285 |
Q |
| |
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|| || ||||| |||||||||||||| ||||| |
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| T |
30718856 |
tctaatctctgcagcaaatttcccccaaggtct |
30718888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 30710483 - 30710561
Alignment:
| Q |
154 |
acctctcattgaaaaagcagcttgatcataagctagtgctgctgcttcagcactatcaaatgttcctaaccataccctt |
232 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| || || |||||||||||||||||||||||| ||| |||||| |
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|
| T |
30710483 |
acctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttcctagccaaaccctt |
30710561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 162 - 285
Target Start/End: Original strand, 30629514 - 30629637
Alignment:
| Q |
162 |
ttgaaaaagcagcttgatcataagctagtgctgctgcttcagcactatcaaatgttcctaaccatacccttatgccatgtctagttgaatcccttatttc |
261 |
Q |
| |
|
|||| ||||| |||||||||||||||| |||||||||||||| |||||||||| || | ||| || || | |||| ||||||||| || |||||||| |
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| T |
30629514 |
ttgataaagctgcttgatcataagctaaagctgctgcttcagctgtatcaaatgtaccaatccaaactctaacaccatttctagttgagtctcttatttc |
30629613 |
T |
|
| Q |
262 |
tgctgcaaatttcccccatggtct |
285 |
Q |
| |
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||||| ||||| ||||||||||| |
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| T |
30629614 |
cgctgcgaattttccccatggtct |
30629637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 154 - 285
Target Start/End: Original strand, 30671819 - 30671950
Alignment:
| Q |
154 |
acctctcattgaaaaagcagcttgatcataagctagtgctgctgcttcagcactatcaaatgttcctaaccatacccttatgccatgtctagttgaatcc |
253 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| || || |||||||||| ||||||||||| | ||| |||||| | ||| || |||| || |
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| T |
30671819 |
acctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactgtcaaatgttccaagccaaacccttttaccaccccttgttgtgtct |
30671918 |
T |
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| Q |
254 |
cttatttctgctgcaaatttcccccatggtct |
285 |
Q |
| |
|
||||||||||| ||| |||||||||| ||||| |
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| T |
30671919 |
cttatttctgcagcatatttcccccaaggtct |
30671950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 153 - 232
Target Start/End: Original strand, 30689713 - 30689792
Alignment:
| Q |
153 |
aacctctcattgaaaaagcagcttgatcataagctagtgctgctgcttcagcactatcaaatgttcctaaccataccctt |
232 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| || || |||||||||||||||||||||| | ||| |||||| |
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|
| T |
30689713 |
aacctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttccaagccaaaccctt |
30689792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 154 - 285
Target Start/End: Original strand, 30698600 - 30698731
Alignment:
| Q |
154 |
acctctcattgaaaaagcagcttgatcataagctagtgctgctgcttcagcactatcaaatgttcctaaccatacccttatgccatgtctagttgaatcc |
253 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||| || || |||||||||||||||||||||||| ||| || ||| | || ||| |||| ||| |
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| T |
30698600 |
acctctcattgagaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttcctagccaaactcttcttcctcctcttgttgtatct |
30698699 |
T |
|
| Q |
254 |
cttatttctgctgcaaatttcccccatggtct |
285 |
Q |
| |
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|| || ||||| |||||||||||||| ||||| |
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|
| T |
30698700 |
ctgatctctgcagcaaatttcccccaaggtct |
30698731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 49532636 - 49532574
Alignment:
| Q |
170 |
gcagcttgatcataagctagtgctgctgcttcagcactatcaaatgttcctaaccataccctt |
232 |
Q |
| |
|
|||||||||||||| ||| |||||||||||| || | ||||||||||||||||| |||||| |
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|
| T |
49532636 |
gcagcttgatcatatgctcttgctgctgcttctgccgtctcaaatgttcctaaccacaccctt |
49532574 |
T |
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