View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20604_high_1 (Length: 317)
Name: NF20604_high_1
Description: NF20604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20604_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 11982800 - 11982565
Alignment:
| Q |
1 |
ttgtaagtagggacaatattgtgaataagttgattatgattataaattgtgcttgttaaagtattaaacaatttgatcacttcagtatcaaaatctatgt |
100 |
Q |
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| T |
11982800 |
ttgtatgtagggacaatattgtgaataagttgattatgattataaattgtgcttgttaaagtattaaacaatttgatcacttcagtatcaaaatatatgt |
11982701 |
T |
|
| Q |
101 |
tgttatttgccacaataccattgttaattgtggatttgtttcattatgagtttaaattactattattatatcattttgataaatttgtttctttgcaaca |
200 |
Q |
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| T |
11982700 |
tgtcatttgctacaataccattgttaattgtggatttgtttcattatgagtttaaattactattattatatcattttgataaatttgtttctttgcaaca |
11982601 |
T |
|
| Q |
201 |
gaaaagtcaagacaagagtcgaaaaatagattcatt |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
11982600 |
gaaaagtcaagacaagagtcgaaaaatagattcatt |
11982565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 245
Target Start/End: Complemental strand, 257443 - 257334
Alignment:
| Q |
136 |
ttgtttcattatgagtttaaattactattattatatcattttgataaatttgtttctttgcaacagaaaagtcaa-gacaagagtcgaaaaatagattca |
234 |
Q |
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| T |
257443 |
ttgtttcattatgagtcttaac-actattctcacatcattttgataaatttgtttatttgcaatagaaaagtaaaggtgaagagtcgagaaatcgattca |
257345 |
T |
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| Q |
235 |
tttttcaagag |
245 |
Q |
| |
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||||||||||| |
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| T |
257344 |
tttttcaagag |
257334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 116 - 245
Target Start/End: Original strand, 5086221 - 5086350
Alignment:
| Q |
116 |
taccattgttaattgtggatttgtttcattatgagtttaaattactattattatatcattttgataaatttgtttctttgcaacagaaaagtcaaga-ca |
214 |
Q |
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||||||||| |||||| ||||||||||||||||||| | ||| | |||| ||| |||| |||||||||||||||||||||||||||||||||||||| | |
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| T |
5086221 |
taccattgtcaattgtagatttgtttcattatgagtcttaataa-tattcttacatcactttgataaatttgtttctttgcaacagaaaagtcaagatga |
5086319 |
T |
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| Q |
215 |
agagtcgaaaaatagattcatttttcaagag |
245 |
Q |
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| T |
5086320 |
agagtcaaacaatctattcattttacaagag |
5086350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 119 - 245
Target Start/End: Complemental strand, 29521638 - 29521512
Alignment:
| Q |
119 |
cattgttaattgtggatttgtttcattatgagtttaaattactattattatatcattttgataaatttgtttctttgcaacagaaaagtcaaga-caaga |
217 |
Q |
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| T |
29521638 |
cattgtcaactgtagatttgtttcattatgagtcttaac-actattcttacatcattttgataaatttgtttccttgcaacaaaaaagtcaagatgaaga |
29521540 |
T |
|
| Q |
218 |
gtcgaaaaatagattcatttttcaagag |
245 |
Q |
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||| |||||| ||||||||| |||||| |
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| T |
29521539 |
gtcaaaaaatctattcattttacaagag |
29521512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 116 - 212
Target Start/End: Original strand, 43327492 - 43327587
Alignment:
| Q |
116 |
taccattgttaattgtggatttgtttcattatgagtttaaattactattattatatcattttgataaatttgtttctttgcaacagaaaagtcaaga |
212 |
Q |
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||||||||| |||||| ||||||||||||||||||| | || | |||| ||| |||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
43327492 |
taccattgtcaattgtagatttgtttcattatgagtcttaacaa-tattcttacatcactttgataaatttgtttctttgcaacagaaaagacaaga |
43327587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 116 - 245
Target Start/End: Original strand, 95639 - 95768
Alignment:
| Q |
116 |
taccattgttaattgtggatttgtttcattatgagtttaaattactattattatatcattttgataaatttgtttctttgcaacagaaaagtcaaga-ca |
214 |
Q |
| |
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||||||||| |||||| ||||||||||||||| ||| | || | |||| ||| |||| |||||||||||||||||||||||||||||||||||||| | |
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| T |
95639 |
taccattgtcaattgtagatttgtttcattataagtcttaacaa-tattcttacatcactttgataaatttgtttctttgcaacagaaaagtcaagatga |
95737 |
T |
|
| Q |
215 |
agagtcgaaaaatagattcatttttcaagag |
245 |
Q |
| |
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|||||| || ||| ||||||||| |||||| |
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| T |
95738 |
agagtcaaacaatctattcattttacaagag |
95768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 128 - 212
Target Start/End: Complemental strand, 17978237 - 17978154
Alignment:
| Q |
128 |
ttgtggatttgtttcattatgagtttaaattactattattatatcattttgataaatttgtttctttgcaacagaaaagtcaaga |
212 |
Q |
| |
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|||| ||||||||||||||||||| | || |||||| ||| || ||||||||||||||||||| |||||||||||||||||||| |
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| T |
17978237 |
ttgtagatttgtttcattatgagtcttaac-actattcttacattattttgataaatttgtttccttgcaacagaaaagtcaaga |
17978154 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 8362455 - 8362491
Alignment:
| Q |
176 |
ttgataaatttgtttctttgcaacagaaaagtcaaga |
212 |
Q |
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|||||||||||||||||||||| ||||||||| |||| |
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| T |
8362455 |
ttgataaatttgtttctttgcagcagaaaagttaaga |
8362491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 34438538 - 34438474
Alignment:
| Q |
182 |
aatttgtttctttgcaacagaaaagtcaaga-caagagtcgaaaaatagattcatttttcaagag |
245 |
Q |
| |
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||||| |||||||||||||||||||| |||| |||||||||||||| |||| ||||||||||| |
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| T |
34438538 |
aatttatttctttgcaacagaaaagttaagataaagagtcgaaaaatcgatttgtttttcaagag |
34438474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 245
Target Start/End: Complemental strand, 3781593 - 3781524
Alignment:
| Q |
177 |
tgataaatttgtttctttgcaacagaaaagtcaaga-caagagtcgaaaaatagattcatttttcaagag |
245 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||| |||| || |||||| ||||||||| |||||| |
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|
| T |
3781593 |
tgataaatttgtttctttgcaacagaagaatcaagatgaagaatcaaaaaatctattcattttacaagag |
3781524 |
T |
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