View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20604_high_3 (Length: 227)
Name: NF20604_high_3
Description: NF20604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20604_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 12829712 - 12829798
Alignment:
| Q |
7 |
atgtctaccatcatgttctcagaaacctcaaaagttctatatatacaagagcttataaaaaggacagattaaactttagagaaatgt |
93 |
Q |
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| T |
12829712 |
atgtctaccatcatgttctcagaaacgtcaaaagttctatatatacaagagcttataaaaaggacagattaaactttagagaaatgt |
12829798 |
T |
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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 227
Target Start/End: Original strand, 12829901 - 12829931
Alignment:
| Q |
197 |
taactgacaaattcaacttcatgttaagagg |
227 |
Q |
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| T |
12829901 |
taactgacaaattcaacttcatgttaagagg |
12829931 |
T |
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