View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20604_low_2 (Length: 261)

Name: NF20604_low_2
Description: NF20604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20604_low_2
NF20604_low_2
[»] chr4 (3 HSPs)
chr4 (50-253)||(11982915-11983135)
chr4 (159-203)||(55403774-55403818)
chr4 (18-50)||(11983152-11983184)
[»] chr2 (3 HSPs)
chr2 (100-203)||(36619816-36619914)
chr2 (159-203)||(43326535-43326579)
chr2 (164-203)||(29522236-29522275)
[»] chr6 (2 HSPs)
chr6 (159-203)||(92741-92785)
chr6 (159-203)||(32504247-32504291)
[»] chr1 (3 HSPs)
chr1 (159-203)||(12307541-12307585)
chr1 (160-203)||(19659360-19659403)
chr1 (160-203)||(51448373-51448416)
[»] chr7 (2 HSPs)
chr7 (164-203)||(17978356-17978395)
chr7 (159-199)||(37125969-37126009)
[»] chr5 (1 HSPs)
chr5 (160-197)||(3801144-3801181)
[»] chr3 (1 HSPs)
chr3 (159-203)||(19972939-19972983)


Alignment Details
Target: chr4 (Bit Score: 139; Significance: 8e-73; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 50 - 253
Target Start/End: Complemental strand, 11983135 - 11982915
Alignment:
Q  50 aagcgcttttgggtttcaactccaatctgcaacgcatcttctcttctc----attctgatt------cttcgtctgtttagtaatgatactacttcgaat 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||      |||||||||||||||||||||||||||||||||    
T  11983135 aagcgcttttgggtttcaactccaatctgcaacgcatcttctcttctctctgattctgattttgtttcttcgtctgtttagtaatgatactacttcgaat 11983036  T
Q  140 accttttgtttgttgatgaatttgattt-------gtttttcaagttcaattttcccataaccctaatcaacattgaaaacgtaattatgttattgtaat 232  Q
    |||| ||||||||||| |||||||||||       ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11983035 acctcttgtttgttgacgaatttgatttttgatttgtttttcaacttcaattttcccataaccctaatcaacactgaaaacgtaattatgttattgtaat 11982936  T
Q  233 tcagattttaaattgatgatg 253  Q
    |||||||||||||||||||||    
T  11982935 tcagattttaaattgatgatg 11982915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 55403774 - 55403818
Alignment:
Q  159 atttgatttgtttttcaagttcaattttcccataaccctaatcaa 203  Q
    |||||||||| ||||||| || |||||||||||||||||||||||    
T  55403774 atttgatttggttttcaatttaaattttcccataaccctaatcaa 55403818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 11983184 - 11983152
Alignment:
Q  18 aaccaaacaacttcaacaaaatcacttttagca 50  Q
    |||||||||||||||||| ||||||||||||||    
T  11983184 aaccaaacaacttcaacagaatcacttttagca 11983152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 100 - 203
Target Start/End: Complemental strand, 36619914 - 36619816
Alignment:
Q  100 tctgattcttcgtctgtttagtaatgatactacttcgaataccttttgtttgttgatgaatttgatttgtttttcaagttcaattttcccataaccctaa 199  Q
    ||||||||||| | |||||||||| |||||| |||| |   ||||||||||||||||||||||||     ||||||| ||||||||||||||||||||||    
T  36619914 tctgattcttcatttgtttagtaacgatactgcttcaatctccttttgtttgttgatgaatttga-----ttttcaacttcaattttcccataaccctaa 36619820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 43326535 - 43326579
Alignment:
Q  159 atttgatttgtttttcaagttcaattttcccataaccctaatcaa 203  Q
    |||||||||| ||||||| || |||||||||||||||||||||||    
T  43326535 atttgatttggttttcaatttaaattttcccataaccctaatcaa 43326579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 203
Target Start/End: Complemental strand, 29522275 - 29522236
Alignment:
Q  164 atttgtttttcaagttcaattttcccataaccctaatcaa 203  Q
    ||||| ||||||| ||||||||||||||||||||||||||    
T  29522275 atttggttttcaatttcaattttcccataaccctaatcaa 29522236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 92741 - 92785
Alignment:
Q  159 atttgatttgtttttcaagttcaattttcccataaccctaatcaa 203  Q
    |||||||||| ||||||| || |||||||||||||||||||||||    
T  92741 atttgatttggttttcaatttaaattttcccataaccctaatcaa 92785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 32504247 - 32504291
Alignment:
Q  159 atttgatttgtttttcaagttcaattttcccataaccctaatcaa 203  Q
    |||| ||||| ||||||| ||||||||||||||||||||||||||    
T  32504247 atttaatttggttttcaatttcaattttcccataaccctaatcaa 32504291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 12307585 - 12307541
Alignment:
Q  159 atttgatttgtttttcaagttcaattttcccataaccctaatcaa 203  Q
    |||||||||| ||||||| || |||||||||||||||||||||||    
T  12307585 atttgatttggttttcaatttaaattttcccataaccctaatcaa 12307541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 203
Target Start/End: Complemental strand, 19659403 - 19659360
Alignment:
Q  160 tttgatttgtttttcaagttcaattttcccataaccctaatcaa 203  Q
    ||||||||||||||||| ||||||||| | ||||||||||||||    
T  19659403 tttgatttgtttttcaatttcaatttttctataaccctaatcaa 19659360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 203
Target Start/End: Original strand, 51448373 - 51448416
Alignment:
Q  160 tttgatttgtttttcaagttcaattttcccataaccctaatcaa 203  Q
    ||||||||| ||||||| ||||||||| ||||||||||||||||    
T  51448373 tttgatttgattttcaacttcaatttttccataaccctaatcaa 51448416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 203
Target Start/End: Complemental strand, 17978395 - 17978356
Alignment:
Q  164 atttgtttttcaagttcaattttcccataaccctaatcaa 203  Q
    ||||| ||||||| ||||||||||||||||||||||||||    
T  17978395 atttggttttcaatttcaattttcccataaccctaatcaa 17978356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 37125969 - 37126009
Alignment:
Q  159 atttgatttgtttttcaagttcaattttcccataaccctaa 199  Q
    |||||||||| ||||||| || |||||||||||||||||||    
T  37125969 atttgatttggttttcaatttaaattttcccataaccctaa 37126009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 197
Target Start/End: Complemental strand, 3801181 - 3801144
Alignment:
Q  160 tttgatttgtttttcaagttcaattttcccataaccct 197  Q
    ||||||||| ||||||| ||||||||||||||||||||    
T  3801181 tttgatttgattttcaatttcaattttcccataaccct 3801144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 19972983 - 19972939
Alignment:
Q  159 atttgatttgtttttcaagttcaattttcccataaccctaatcaa 203  Q
    |||| ||||| ||||||| ||||||||| ||||||||||||||||    
T  19972983 atttaatttggttttcaatttcaatttttccataaccctaatcaa 19972939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University