View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20605_high_3 (Length: 347)
Name: NF20605_high_3
Description: NF20605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20605_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 31032936 - 31033270
Alignment:
| Q |
1 |
atgcatgtataaggtaaagcaaaaatttgaaaaggatgagagaaaggtcatacctgagttaccgtgccttacaacaaaaaatgtggaaatcaagctcatc |
100 |
Q |
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| T |
31032936 |
atgcatgtataatgtaaagcaaaaatttgaaaaggatgagagaaaggtcatacctgagttaccgtgccttacaacaaaaaatgtggaaatcaagctcatc |
31033035 |
T |
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| Q |
101 |
agaaaataaacaaacttgagaaacttagtcatagtttttcttcttttgatgtaaaaacgataaatttgtgtatcaattttatatataatgannnnnnnca |
200 |
Q |
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| T |
31033036 |
agaaaataaacaaacttgagaaacttactcatattttttcttcttttgatgtaaaaaagataaatttgtgtattaa-tttatatataatgatttttttca |
31033134 |
T |
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| Q |
201 |
gaactaatggagatgcnnnnnnntgattttgtcttttatgtacatacatgagtcatgtttacccctttagatcactcaataaatgctctcaaagacggat |
300 |
Q |
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| T |
31033135 |
gaactaatggagatgc-aaaaaatgattttgtcttttatgtacatacatgagtcatgtttacccctttagatcactcaataaatgctctcaaagacggat |
31033233 |
T |
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| Q |
301 |
tctcttggtgtgcgggatcaggtagttcttccctttg |
337 |
Q |
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| T |
31033234 |
tctcttggcatttgggatcaggtagttcttccttttg |
31033270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 179
Target Start/End: Complemental strand, 31028034 - 31027882
Alignment:
| Q |
30 |
aaaaggatgagagaaaggtcatacctgagttaccgtgccttacaacaaaaaatgtggaaatcaagctcatcagaaaataaacaaacttgagaaacttagt |
129 |
Q |
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| T |
31028034 |
aaaaggattagtgaaaggtcataccagagctttcatcccttacaacaaaaaatatggaaatcaagatgatcgtagcataaaaaaatttgagaaacttaat |
31027935 |
T |
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| Q |
130 |
cata---gtttttcttcttttgatgtaaaaacgataaatttgtgtatcaattt |
179 |
Q |
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| T |
31027934 |
catatttttttttctccttttgatgttaaaaagataaatgtttatatcaattt |
31027882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 281 - 331
Target Start/End: Original strand, 41385766 - 41385816
Alignment:
| Q |
281 |
aaatgctctcaaagacggattctcttggtgtgcgggatcaggtagttcttc |
331 |
Q |
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| T |
41385766 |
aaatgctctcaaagacggtttctcttggtgtgtgggatcatgtatttcttc |
41385816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 337
Target Start/End: Complemental strand, 27849373 - 27849317
Alignment:
| Q |
281 |
aaatgctctcaaagacggattctcttggtgtgcgggatcaggtagttcttccctttg |
337 |
Q |
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| T |
27849373 |
aaatgttctcaaagatggtttctcttggcgcgcgggatcaggtaattcttccttttg |
27849317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 337
Target Start/End: Original strand, 18900329 - 18900385
Alignment:
| Q |
281 |
aaatgctctcaaagacggattctcttggtgtgcgggatcaggtagttcttccctttg |
337 |
Q |
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| T |
18900329 |
aaatgctctgaaagaaggtttttcttggcgtgcgggttcaggtagttcttccttttg |
18900385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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