View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20605_high_4 (Length: 335)
Name: NF20605_high_4
Description: NF20605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20605_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 37976405 - 37976710
Alignment:
| Q |
1 |
gttataggataaaaatattctaatataagctacttgataagggaccctcttttactcttattattacctgaatctccaagtatccaatcattgtaggtta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37976405 |
gttataggataaaaatattctaatataagctacttgataagggaccctcttttactcttattattacctgaatctccaagtatccaatcattgtaggtta |
37976504 |
T |
|
| Q |
101 |
tgatgatcttatctccatattaaggatatcttactgagatatatatagcaacaactccgttgtttcctgctattccatgtataacaagttcttgttagtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
37976505 |
tgatgatcttatctccatattaaggatatcttactgagatatatatagcaacaactccgttgtttcctgctattccatgtattacaagttcttgttagtt |
37976604 |
T |
|
| Q |
201 |
atatacacgtgtgaaaagtggtcctaagtttaatgcacaagtggatcattgtaaccttcttctaggggtaggtaggtgagattaatttctttttaacatg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37976605 |
atatacacgtgtgaaaagtggtcctaagtttaatgcacaagtggatcattgtaaccttcttctaggggtaggtaggtgagattaatttctttttaacatg |
37976704 |
T |
|
| Q |
301 |
gctatg |
306 |
Q |
| |
|
|||||| |
|
|
| T |
37976705 |
gctatg |
37976710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University