View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20605_low_3 (Length: 250)
Name: NF20605_low_3
Description: NF20605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20605_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 47 - 128
Target Start/End: Original strand, 33884273 - 33884354
Alignment:
| Q |
47 |
atattagtgatgtttttcaggcagagttaacaggagctacgaaggcttttgaaattacttgtgatttagcattgaccaaata |
128 |
Q |
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| T |
33884273 |
atattggtgatgtttttcaggcagagttaacaggagctacgaaggcttttgaaattacttgtgatttagcattgaccaaata |
33884354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 47 - 128
Target Start/End: Complemental strand, 33959979 - 33959898
Alignment:
| Q |
47 |
atattagtgatgtttttcaggcagagttaacaggagctacgaaggcttttgaaattacttgtgatttagcattgaccaaata |
128 |
Q |
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| T |
33959979 |
atattggtgatgtttttcaggcagagttaacaggagctacgaaggcttttgaaattacttgtgatttagcattgaccaaata |
33959898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 33884052 - 33884084
Alignment:
| Q |
19 |
acaacaggttatttttcttaaaacattgatatt |
51 |
Q |
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| T |
33884052 |
acaacaggttatttttcttaaaacattaatatt |
33884084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 33960200 - 33960168
Alignment:
| Q |
19 |
acaacaggttatttttcttaaaacattgatatt |
51 |
Q |
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| T |
33960200 |
acaacaggttatttttcttaaaacattaatatt |
33960168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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