View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20606_high_1 (Length: 594)
Name: NF20606_high_1
Description: NF20606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20606_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 380 - 568
Target Start/End: Original strand, 3653049 - 3653237
Alignment:
| Q |
380 |
gcattggtaacaaagggaatgtatcgtcatgcatacagatggttgtggaaaaagggagtcaaagaaggaggaaaacgaagcagtggtggagtccttggaa |
479 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3653049 |
gcattggtaacaaagggaatgtatcgtcatgcatacagatggttgtggaaaaagggagtcaaagaaggaggaaaacgaagcagtggtggagtccttggaa |
3653148 |
T |
|
| Q |
480 |
ctgaaaagttgattgaaattcacggttgatgaagaattggaagaagaccatgtttggtttttgttgttatccatgttcatagatatgtt |
568 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3653149 |
ctgaaaagttgattgaaattcacggttgatgaagaattggaagaagaacatgtttggtttttgttgttatccatgttcatagatatgtt |
3653237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 109 - 316
Target Start/End: Original strand, 3652773 - 3652985
Alignment:
| Q |
109 |
ttcaacccaacttttaaatatagaccttaaagcataccaaagctagacagaaaagaacatcgacacaacttactannnnnnnnngtt-----gacaaaaa |
203 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
3652773 |
ttcaaccaaacttttaaatatagaccttaaagcataccaaagctagacagaaaagaacatcgacacaacttactatttttttttttttttttgacaaaaa |
3652872 |
T |
|
| Q |
204 |
cacaaacatgactaaaaattaacaaaacaagtactaactattacatgtcaaatcactatgatgttgttaaccagtcgatataaaattgggaggataaaaa |
303 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
3652873 |
cacaaacacgactaaaaattaacaaaacaagtactaactattacatgtcaaatcactatgatgttcttaaccagtcgatataaaattgggaggataaaaa |
3652972 |
T |
|
| Q |
304 |
atgtagactgtac |
316 |
Q |
| |
|
||||||||||||| |
|
|
| T |
3652973 |
atgtagactgtac |
3652985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 470 - 569
Target Start/End: Complemental strand, 34850258 - 34850162
Alignment:
| Q |
470 |
gtccttggaactgaaaagttgattgaaattcacggttgatgaagaattggaagaagaccatgtttggtttttgttgttatccatgttcatagatatgttt |
569 |
Q |
| |
|
|||||||| || ||||||||||| || |||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||| | |||| ||||| |
|
|
| T |
34850258 |
gtccttgggaccgaaaagttgatcaaatttcacggttgatgaagaa---gaagaagaccatgcttgctttttgttgttatccatgtttaaagatgtgttt |
34850162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University