View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20606_high_2 (Length: 573)

Name: NF20606_high_2
Description: NF20606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20606_high_2
NF20606_high_2
[»] chr3 (3 HSPs)
chr3 (74-287)||(17609468-17609683)
chr3 (382-554)||(17609679-17609857)
chr3 (19-51)||(17609392-17609424)
[»] chr2 (1 HSPs)
chr2 (480-547)||(35509068-35509135)
[»] chr8 (1 HSPs)
chr8 (334-422)||(37684707-37684798)
[»] chr6 (1 HSPs)
chr6 (478-550)||(26387490-26387560)
[»] chr7 (1 HSPs)
chr7 (510-554)||(3581975-3582019)


Alignment Details
Target: chr3 (Bit Score: 121; Significance: 1e-61; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 74 - 287
Target Start/End: Original strand, 17609468 - 17609683
Alignment:
Q  74 gtgcaccacaaatcaggatcaatccataaaatttagaataaaggtttaatgtgtgagtgcgcgcatg--tgtgtattaaatatatattttagtctaatat 171  Q
    |||||||||||| |||||| |||| |||||||||||||||||||||||||||||||| |||||  ||  |||||||||||||||||||| ||| | ||||    
T  17609468 gtgcaccacaaaccaggatgaatctataaaatttagaataaaggtttaatgtgtgagcgcgcgtgtgcgtgtgtattaaatatatatttaagttttatat 17609567  T
Q  172 atattttttcttgtcatgtatcttagttactgtagtgttacactattttattattttttaatgacaactatatatgtataaataaaaaggagaaatttta 271  Q
     | ||||||  ||||| |||||||||||||| || | ||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||| |||    
T  17609568 ttttttttttctgtcaagtatcttagttactataatattacactattttaatattttttaaagacaaatatatatgtataaataaaaaggagaaatctta 17609667  T
Q  272 tgaaagggtataagaa 287  Q
    ||||||||||||||||    
T  17609668 tgaaagggtataagaa 17609683  T

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Target: chr3; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 382 - 554
Target Start/End: Original strand, 17609679 - 17609857
Alignment:
Q  382 aagaacacccaacccaagccgaacaggaggaagactaggaaaagaatcccacaaacaatcagacct-tagataaatccac---ataacattatcggtgca 477  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||   |||| ||||||||||||    
T  17609679 aagaacacccaaccctagccgaacaggaggaagactaggaaaagaatcccacaaacaatca-acctctagataaatccaccacataatattatcggtgca 17609777  T
Q  478 aacacaaaatgacttcatgattcaactcagaaaaggaacatgtgtgatcataattttt---tcctaaaaaccattttcaa 554  Q
    | |||||||||||||||||||||||| || |||||||||||||||||||||| |||||   |||||||||||| ||||||    
T  17609778 atcacaaaatgacttcatgattcaacacataaaaggaacatgtgtgatcatagtttttttctcctaaaaaccaatttcaa 17609857  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 17609392 - 17609424
Alignment:
Q  19 acaacaatatagctacaccaacaacaacaatgg 51  Q
    |||||||||||||||||||||||||||||||||    
T  17609392 acaacaatatagctacaccaacaacaacaatgg 17609424  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 480 - 547
Target Start/End: Complemental strand, 35509135 - 35509068
Alignment:
Q  480 cacaaaatgacttcatgattcaactcagaaaaggaacatgtgtgatcataattttttcctaaaaacca 547  Q
    |||| ||||| |||||||| | ||||| | ||||||||||||||| || ||| |||||||||||||||    
T  35509135 cacataatgagttcatgatcccactcatagaaggaacatgtgtgaccacaatgttttcctaaaaacca 35509068  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 422
Target Start/End: Original strand, 37684707 - 37684798
Alignment:
Q  334 aaacaagagaaaaaactaaaacatca---gacaaccaactaacctcctatcaagaacacccaacccaagccgaacaggaggaagactaggaa 422  Q
    |||||||||  |||||||||||| ||   || |||||||||| |||||||||  ||||| |||||  ||||||||| ||| |||||||||||    
T  37684707 aaacaagagcgaaaactaaaacaccaactgaaaaccaactaaactcctatcagaaacacacaaccatagccgaacaagagcaagactaggaa 37684798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 550
Target Start/End: Original strand, 26387490 - 26387560
Alignment:
Q  478 aacacaaaatgacttcatgattcaactcagaaaaggaacatgtgtgatcataattttttcctaaaaaccattt 550  Q
    |||| ||||||| |||||||| | ||||| |||||  ||| ||||||||||||| |||| |||||||||||||    
T  26387490 aacataaaatgagttcatgatcccactcataaaag--acaagtgtgatcataatatttttctaaaaaccattt 26387560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 554
Target Start/End: Original strand, 3581975 - 3582019
Alignment:
Q  510 aaggaacatgtgtgatcataattttttcctaaaaaccattttcaa 554  Q
    ||||||||| ||||| |||||| ||||||||||||||| ||||||    
T  3581975 aaggaacatttgtgaccataatgttttcctaaaaaccactttcaa 3582019  T

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