View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20606_high_4 (Length: 401)
Name: NF20606_high_4
Description: NF20606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20606_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 40 - 396
Target Start/End: Original strand, 20386825 - 20387179
Alignment:
| Q |
40 |
ctttctattgaagaagcatggttttttgctttatacataacccagtgatgagatctcccgaaaattgatttgataccgaatgcaagatttataatcggtg |
139 |
Q |
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|||||| | |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
20386825 |
ctttctttcgaagaagcatggtttt-tgctttatacataacccagggatgagatctcccgaaaattgatttgataccgtatgcatgatttataatcggtg |
20386923 |
T |
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| Q |
140 |
acgattcaagaatggatgatcccaatacacaacagattggtactagtttgttggtagatcggattgatttcttgttcggaactggattgtatctgtgatt |
239 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
20386924 |
acgattcaagaatggaatatcccaatacacaacagattggtactagtttgttggttgatcggattgatttcttgttcggaactggattgtatttgtgatt |
20387023 |
T |
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| Q |
240 |
tgaaacgggtctctatgagggtatttctcttttatgatgctttactgaatataatttaaggttatgactactatatgtcacacctttggacaaagttttg |
339 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
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| T |
20387024 |
tgaaacgggtctctctgagggtatttctcttttatgatgctttactgaatataatttagggttatgactactatatgtcacaccttt-gacaaagttttg |
20387122 |
T |
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| Q |
340 |
tttccttgctatctcgtgtcttgatgttcctaattttatgttctaatctgtgctgct |
396 |
Q |
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| T |
20387123 |
tttccttgctatctcgtgtcttgatattcctatttttatgttctaatttgtggtgct |
20387179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 40 - 396
Target Start/End: Original strand, 20386057 - 20386411
Alignment:
| Q |
40 |
ctttctattgaagaagcatggttttttgctttatacataacccagtgatgagatctcccgaaaattgatttgataccgaatgcaagatttataatcggtg |
139 |
Q |
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| T |
20386057 |
ctttctattgaagaagcatggtttt-tgctttatacataacccagtgatgtgatctcccgaaaattgatttgatacagtatgcatgatttataatctgtg |
20386155 |
T |
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| Q |
140 |
acgattcaagaatggatgatcccaatacacaacagattggtactagtttgttggtagatcggattgatttcttgttcggaactggattgtatctgtgatt |
239 |
Q |
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| T |
20386156 |
atgattcaagaatggaatatcccaatacacaacagattggtactagtttgttggttgaccggattgatttcttgttcggaactggattgtatttgtgatt |
20386255 |
T |
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| Q |
240 |
tgaaacgggtctctatgagggtatttctcttttatgatgctttactgaatataatttaaggttatgactactatatgtcacacctttggacaaagttttg |
339 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
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| T |
20386256 |
tgaaacgggtctctttgagggtatttctcttttatgatgctttacagaatataatttagggttatgactactatatgtcacaccttt-gacaaagttttg |
20386354 |
T |
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| Q |
340 |
tttccttgctatctcgtgtcttgatgttcctaattttatgttctaatctgtgctgct |
396 |
Q |
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| T |
20386355 |
tttccttgctatctcgtgtcttgatattcctatttttatgttctaatttgtggtgct |
20386411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 40 - 396
Target Start/End: Original strand, 20386441 - 20386795
Alignment:
| Q |
40 |
ctttctattgaagaagcatggttttttgctttatacataacccagtgatgagatctcccgaaaattgatttgataccgaatgcaagatttataatcggtg |
139 |
Q |
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|||||| | |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||| ||||||||||| ||| |
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| T |
20386441 |
ctttctttcgaagaagcatggtttt-tgctttatacataacccagggatgagatctcccgaaaattgatttgatacagtatgcatgatttataatctgtg |
20386539 |
T |
|
| Q |
140 |
acgattcaagaatggatgatcccaatacacaacagattggtactagtttgttggtagatcggattgatttcttgttcggaactggattgtatctgtgatt |
239 |
Q |
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| |||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
20386540 |
atgattcaagaatggaatatcccaatacacaacagattggtactagtttgttggttgaccggattgatttcttgttcggaactggattgtatttgtgatt |
20386639 |
T |
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| Q |
240 |
tgaaacgggtctctatgagggtatttctcttttatgatgctttactgaatataatttaaggttatgactactatatgtcacacctttggacaaagttttg |
339 |
Q |
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||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||| |||||||||||| |
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| T |
20386640 |
tgaaatgggtctctctgagggtatttctcttttatgatgctttacagaatataatttagggttatgactactatatgtcacaacttt-gacaaagttttg |
20386738 |
T |
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| Q |
340 |
tttccttgctatctcgtgtcttgatgttcctaattttatgttctaatctgtgctgct |
396 |
Q |
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| T |
20386739 |
tttccttgctatctcgtgtcttgatattcctatttttatgttctaatttgtggtgct |
20386795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 40 - 338
Target Start/End: Original strand, 20387209 - 20387504
Alignment:
| Q |
40 |
ctttctattgaagaagcatggttttttgctttatacataacccagtgatgagatctcccgaaaattgatttgataccgaatgcaagatttataatcggtg |
139 |
Q |
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|||||| | ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
20387209 |
ctttctttcgaagaagcatggttttt-gttttatacataacccagtgatgagatctcccgaaaattgatttgataccgtatgcatgatttataatcggtg |
20387307 |
T |
|
| Q |
140 |
acgattcaagaatggatgatcccaatacacaacagattggtactagtttgttggtagatcggattgatttcttgttcggaactggattgtatctgtgatt |
239 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
20387308 |
acgattcaagaatggaatatcccaatacacaacagattggtactagtttgttggtagatcggattgatttcttgttcggaactggattgtatatgtgatt |
20387407 |
T |
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| Q |
240 |
tgaaacgggtctctatgagggtatttctcttttatgatgctttactgaatataatttaaggttatgactactatatgtcacacctttggacaaagtttt |
338 |
Q |
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||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||| |||| |
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| T |
20387408 |
tgaaatgggtctctctgagggtatttctcttttatgatgctttactgaatataatttagggttatgactactata-gtcacacc-ttggacaaattttt |
20387504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 62 - 222
Target Start/End: Original strand, 20387671 - 20387839
Alignment:
| Q |
62 |
tttttgctttatacataacccagtgatgagatctcccgaaaattgatttgataccgaatgcaagatt---------tataatcggtgacgattcaagaat |
152 |
Q |
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|||||||||| ||||||||||| | ||||||| |||| |||||||||| ||| ||| ||||| |||| |||||||||||||||||||||||| |
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| T |
20387671 |
tttttgctttttacataacccattaatgagatatcccaaaaattgattggatgccgtatgcatgatttatatgatttataatcggtgacgattcaagaat |
20387770 |
T |
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| Q |
153 |
ggatgatcccaatacacaacagattggtactagtttgttggtagatcggattgatttcttgttcggaact |
222 |
Q |
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|||| |||||||||||||||| |||| |||| |||||||| | ||||||| |||||||||| |||||| |
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| T |
20387771 |
ggat-atcccaatacacaacaaattgatactcgtttgttgttttatcggataaatttcttgtttggaact |
20387839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 346 - 396
Target Start/End: Original strand, 20385985 - 20386035
Alignment:
| Q |
346 |
tgctatctcgtgtcttgatgttcctaattttatgttctaatctgtgctgct |
396 |
Q |
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||||||||| |||||||||||||||| |||||||||||||| |||| |||| |
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| T |
20385985 |
tgctatctcatgtcttgatgttcctatttttatgttctaatttgtggtgct |
20386035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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