View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20606_high_7 (Length: 230)
Name: NF20606_high_7
Description: NF20606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20606_high_7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 25 - 230
Target Start/End: Original strand, 50201461 - 50201670
Alignment:
| Q |
25 |
tatatatatagtgtttaatggtgattgttttgttgagaacaggtgcaagaggttgttctttcagcagacatgcaatgtgaaacttgccagaagagagttg |
124 |
Q |
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| T |
50201461 |
tatatatatagtgtttaatggtgattgttttgttgagaacaggtgcaagaggttgttctttcagcagacatgcaatgtgaaacttgccagaagagagttg |
50201560 |
T |
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| Q |
125 |
ctgaaattattacaaaaatgaatggtaagcttgtttctgtatcatttttgttctgttgaaataaggagatatcatttatggc----tatatgtgttgcac |
220 |
Q |
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| T |
50201561 |
ctgacattattacaaaaatgaatggtaagcttgtttctgtatcatttttgttctgttgaaataaggagatatcatttatggctatatatatgtgttggac |
50201660 |
T |
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| Q |
221 |
atgattgtga |
230 |
Q |
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|||||||||| |
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| T |
50201661 |
atgattgtga |
50201670 |
T |
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Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 62 - 153
Target Start/End: Complemental strand, 22739580 - 22739489
Alignment:
| Q |
62 |
aacaggtgcaagaggttgttctttcagcagacatgcaatgtgaaacttgccagaagagagttgctgaaattattacaaaaatgaatggtaag |
153 |
Q |
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| T |
22739580 |
aacaggttcatgaggttgttctttcagcagatatgcagtgtgagaagtgccaaaagagggttattgacattattactaaaatgaatggtaag |
22739489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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