View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20606_low_3 (Length: 433)

Name: NF20606_low_3
Description: NF20606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20606_low_3
NF20606_low_3
[»] chr5 (11 HSPs)
chr5 (83-418)||(16487294-16487629)
chr5 (264-418)||(40415119-40415273)
chr5 (194-417)||(29417496-29417722)
chr5 (290-417)||(42835320-42835447)
chr5 (134-239)||(42835176-42835281)
chr5 (311-402)||(24654650-24654741)
chr5 (23-86)||(36904145-36904208)
chr5 (291-417)||(42841382-42841508)
chr5 (313-386)||(21698801-21698874)
chr5 (181-265)||(24654805-24654889)
chr5 (192-248)||(37409049-37409105)
[»] chr8 (2 HSPs)
chr8 (302-399)||(15632148-15632245)
chr8 (302-417)||(15600865-15600980)
[»] chr6 (1 HSPs)
chr6 (21-86)||(28105863-28105928)
[»] scaffold0134 (1 HSPs)
scaffold0134 (200-250)||(16974-17024)
[»] scaffold0068 (1 HSPs)
scaffold0068 (313-386)||(15036-15109)
[»] chr1 (1 HSPs)
chr1 (192-246)||(34287770-34287824)


Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 83 - 418
Target Start/End: Original strand, 16487294 - 16487629
Alignment:
Q  83 tgggatgcacaaaacagacacagagttccacaaacgctgccagatcctaatatattaaaaccagaatcatactccgtttgatcccgatatataggatcta 182  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16487294 tgggatgcacaaaacagacacagagttccaagaacgctgccagatcctaatatattaaaaccagaatcatactccgtttgatcccgatatataggatcta 16487393  T
Q  183 atttgacacttggccagtctaatttgaccctattctcaaacctcttaccagcaagagaatacaaatcaaatgtttcatcgtgataataaccctcaaaagg 282  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16487394 atttgacacttggccaatctaatttgatcctattctcaaacctcttaccagcaagagaatacaaatcaaatgtttcatcgtgataataaccctcaaaagg 16487493  T
Q  283 agaaaatgtttgatgtagtagaaaagacgtatcatgataataaggatgatcctttgttaagagattattgcgatacatagtcatgaaatgtgggttatca 382  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16487494 agaaaatgtttgatgtagtagaaaagacgtatcatgataataagaatgatcctttgttaagagattattgcgatacatagtcatgaaatgtgggttatca 16487593  T
Q  383 aataaaagcgaccatgatttgtgtacgcatccaaac 418  Q
    ||||||||||||||||||||||||||||||||||||    
T  16487594 aataaaagcgaccatgatttgtgtacgcatccaaac 16487629  T

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Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 264 - 418
Target Start/End: Complemental strand, 40415273 - 40415119
Alignment:
Q  264 gataataaccctcaaaaggagaaaatgtttgatgtagtagaaaagacgtatcatgataataaggatgatcctttgttaagagattattgcgatacatagt 363  Q
    |||||||||| |||||||||| |||||||||||||||||||| ||||  |||||||||||||||||| ||  ||||||||||||||||||||||||||||    
T  40415273 gataataaccatcaaaaggagtaaatgtttgatgtagtagaacagacacatcatgataataaggatgttctcttgttaagagattattgcgatacatagt 40415174  T
Q  364 catgaaatgtgggttatcaaataaaagcgaccatgatttgtgtacgcatccaaac 418  Q
    |||||||| ||  ||||||||||||||||| |||||||||  ||| |||||||||    
T  40415173 catgaaatatgaattatcaaataaaagcgatcatgatttgcatacacatccaaac 40415119  T

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Target: chr5; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 194 - 417
Target Start/End: Original strand, 29417496 - 29417722
Alignment:
Q  194 ggccagtctaatttgaccctattctcaaacctcttaccagcaagagaatacaaatcaaatgtttcatcgt---gataataaccctcaaaaggagaaaatg 290  Q
    ||||| |||||||||||| ||||||||||||||  ||| | || ||||||||| ||||||||||| |||    ||| | | || | | ||||| ||||||    
T  29417496 ggccaatctaatttgaccttattctcaaacctcgaaccggaaacagaatacaactcaaatgtttcttcgaaaggatgacagccataagaaggacaaaatg 29417595  T
Q  291 tttgatgtagtagaaaagacgtatcatgataataaggatgatcctttgttaagagattattgcgatacatagtcatgaaatgtgggttatcaaataaaag 390  Q
    |||| ||||| || | ||| |||| || |||||||| |||||||||||||| || || || ||| ||||| ||||||||||  |||||||| ||||||||    
T  29417596 tttggtgtaggaggagagaggtattatcataataagaatgatcctttgttacgaaatgatagcggtacatggtcatgaaataagggttatctaataaaag 29417695  T
Q  391 cgaccatgatttgtgtacgcatccaaa 417  Q
     ||||||||||| ||||| || |||||    
T  29417696 ggaccatgatttatgtacacaaccaaa 29417722  T

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Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 290 - 417
Target Start/End: Original strand, 42835320 - 42835447
Alignment:
Q  290 gtttgatgtagtagaaaagacgtatcatgataataaggatgatcctttgttaagagattattgcgatacatagtcatgaaatgtgggttatcaaataaaa 389  Q
    ||||||||||| || | ||| ||||| | |||||||||||||| ||||||||||| |   ||||||||||||||||||||||   | |||||||| ||||    
T  42835320 gtttgatgtaggaggacagatgtatcgtcataataaggatgattctttgttaagaaagagttgcgatacatagtcatgaaataaagattatcaaacaaaa 42835419  T
Q  390 gcgaccatgatttgtgtacgcatccaaa 417  Q
    | ||||||||||||||||||||||||||    
T  42835420 gggaccatgatttgtgtacgcatccaaa 42835447  T

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Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 134 - 239
Target Start/End: Original strand, 42835176 - 42835281
Alignment:
Q  134 atattaaaaccagaatcatactccgtttgatcccgatatataggatctaatttgacacttggccagtctaatttgaccctattctcaaacctcttaccag 233  Q
    ||||||||||| |||||||||||   || || | ||||||| |||||||| |||||||||||||| ||||| |||||||| ||||||||||||| |||||    
T  42835176 atattaaaaccggaatcatactcttctttatgcagatatatcggatctaacttgacacttggccaatctaagttgacccttttctcaaacctctcaccag 42835275  T
Q  234 caagag 239  Q
     |||||    
T  42835276 aaagag 42835281  T

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Target: chr5; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 311 - 402
Target Start/End: Complemental strand, 24654741 - 24654650
Alignment:
Q  311 gtatcatgataataaggatgatcctttgttaagagattattgcgatacatagtcatgaaatgtgggttatcaaataaaagcgaccatgattt 402  Q
    ||||||| |||||||| |||||||||||||| || || || ||| ||||| ||||||||||  |||||||| |||||||| |||||||||||    
T  24654741 gtatcatcataataagaatgatcctttgttacgaaatgatagcggtacatggtcatgaaataagggttatctaataaaagggaccatgattt 24654650  T

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Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 36904208 - 36904145
Alignment:
Q  23 cgaagggaaaagtgtgaaaaacgaaggaggaaagcacaccggagttatgccggaagtggttggg 86  Q
    ||||| ||||||||||||||| ||| | ||||||||||||||||||| | ||||||||||||||    
T  36904208 cgaagagaaaagtgtgaaaaatgaaaggggaaagcacaccggagttacgtcggaagtggttggg 36904145  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 291 - 417
Target Start/End: Original strand, 42841382 - 42841508
Alignment:
Q  291 tttgatgtagtagaaaagacgtatcatgataataaggatgatcctttgttaagagattattgcgatacatagtcatgaaatgtgggttatcaaataaaag 390  Q
    |||||||||| || | ||| ||||||| |||| ||| |||| | || ||||||| ||  ||||| ||||||||||| ||||   | ||||||||||| ||    
T  42841382 tttgatgtaggaggatagatgtatcatcataaaaagaatgacctttggttaagaaatagttgcggtacatagtcataaaatcatgattatcaaataatag 42841481  T
Q  391 cgaccatgatttgtgtacgcatccaaa 417  Q
     ||||||||||| ||||||||| ||||    
T  42841482 agaccatgatttatgtacgcattcaaa 42841508  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 313 - 386
Target Start/End: Complemental strand, 21698874 - 21698801
Alignment:
Q  313 atcatgataataaggatgatcctttgttaagagattattgcgatacatagtcatgaaatgtgggttatcaaata 386  Q
    ||||| |||||||| ||||||||||||||||||||   | ||||| | |||||||||||  |||||||||||||    
T  21698874 atcatcataataagaatgatcctttgttaagagataggttcgatataaagtcatgaaattagggttatcaaata 21698801  T

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Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 265
Target Start/End: Complemental strand, 24654889 - 24654805
Alignment:
Q  181 taatttgacacttggccagtctaatttgaccctattctcaaacctcttaccagcaagagaatacaaatcaaatgtttcatcgtga 265  Q
    |||||||| | ||||||| |||||||||||| |||| ||||| |||  ||| | || ||||||||| |||||||| |||||||||    
T  24654889 taatttgatatttggccaatctaatttgaccttattttcaaaactcgaaccggaaacagaatacaactcaaatgtatcatcgtga 24654805  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 248
Target Start/End: Original strand, 37409049 - 37409105
Alignment:
Q  192 ttggccagtctaatttgaccctattctcaaacctcttaccagcaagagaatacaaat 248  Q
    ||||||| |||| |||||| ||||||||||||||||  || | ||||||||||||||    
T  37409049 ttggccaatctagtttgactctattctcaaacctctcgcccgaaagagaatacaaat 37409105  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 302 - 399
Target Start/End: Original strand, 15632148 - 15632245
Alignment:
Q  302 agaaaagacgtatcatgataataaggatgatcctttgttaagagattattgcgatacatagtcatgaaatgtgggttatcaaataaaagcgaccatga 399  Q
    |||| |||| |||| |||||||||| ||| ||||||| ||||| ||||||||| | |||||||||||||||  |||| |||||||| || ||||||||    
T  15632148 agaagagacatatcgtgataataagaatggtcctttgataagaaattattgcggtgcatagtcatgaaatgatggttgtcaaataagagagaccatga 15632245  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 302 - 417
Target Start/End: Original strand, 15600865 - 15600980
Alignment:
Q  302 agaaaagacgtatcatgataataaggatgatcctttgttaagagattattgcgatacatagtcatgaaatgtgggttatcaaataaaagcgaccatgatt 401  Q
    |||| |||| |||| |||||||||| ||| ||||||| ||||| ||||||||| | |||||||||||||||  |||| | |||||| || |||||||| |    
T  15600865 agaagagacatatcgtgataataagaatggtcctttgataagaaattattgcggtgcatagtcatgaaatgatggttgtgaaataagagagaccatgact 15600964  T
Q  402 tgtgtacgcatccaaa 417  Q
    |  || ||||||||||    
T  15600965 tacgtgcgcatccaaa 15600980  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 28105863 - 28105928
Alignment:
Q  21 aacgaagggaaaagtgtgaaaaacgaaggaggaaagcacaccggagttatgccggaagtggttggg 86  Q
    ||||||| |||||||||||||||  |||| ||||| ||||||||||||| |||||| |||||||||    
T  28105863 aacgaagagaaaagtgtgaaaaataaagggggaaatcacaccggagttacgccggacgtggttggg 28105928  T

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Target: scaffold0134 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 250
Target Start/End: Original strand, 16974 - 17024
Alignment:
Q  200 tctaatttgaccctattctcaaacctcttaccagcaagagaatacaaatca 250  Q
    |||||||||||| ||||||||||||||| ||||| ||||||||| ||||||    
T  16974 tctaatttgaccttattctcaaacctctcaccagaaagagaataaaaatca 17024  T

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Target: scaffold0068 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 313 - 386
Target Start/End: Original strand, 15036 - 15109
Alignment:
Q  313 atcatgataataaggatgatcctttgttaagagattattgcgatacatagtcatgaaatgtgggttatcaaata 386  Q
    ||||| |||||||| ||||||||||||||||||||   | ||||| | |||||||||||  |||||||||||||    
T  15036 atcatcataataagaatgatcctttgttaagagataggttcgatataaagtcatgaaattagggttatcaaata 15109  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 34287824 - 34287770
Alignment:
Q  192 ttggccagtctaatttgaccctattctcaaacctcttaccagcaagagaatacaa 246  Q
    ||||||| |||||||||||| |||| |||||||||| || || ||||||||||||    
T  34287824 ttggccaatctaatttgaccttattatcaaacctctcactagaaagagaatacaa 34287770  T

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