View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20606_low_5 (Length: 370)
Name: NF20606_low_5
Description: NF20606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20606_low_5 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 19 - 370
Target Start/End: Original strand, 31015227 - 31015572
Alignment:
| Q |
19 |
ttgagttcagccaaactcaacccatacaaaatcgacttgtatggtgagtactgtctccacttataaacacattttccggcctgatctcattcaattcaaa |
118 |
Q |
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| T |
31015227 |
ttgagttcagccaaaatcaacccatacaaaatcgacttgtatggtgagtactgtctccacttataaacacattttccggcctgatctcattcaattcaaa |
31015326 |
T |
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| Q |
119 |
gtaagacacttaacatacagtcaagttgagagaagcgagaatcatatacatatacttattcaatatcataacattaacataatagcatacatttttgctc |
218 |
Q |
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| T |
31015327 |
gtaagaaaattaacatacagtcaagtcgagagaagcgagaatcatctac------ttattcaatatcataacattaacataatagcacacatttttgctc |
31015420 |
T |
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| Q |
219 |
caaattaaatccactaggctgcatactgaaactattatagaacaattaagagctaacttaccatttcctggattttaacctaggccgaacagaaatcacc |
318 |
Q |
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| T |
31015421 |
caaattaaatccactaggctgcatactgaaactattatagaacaattaagacctaacttaccatttcctggattttaacctaggctgaacagaaatcacc |
31015520 |
T |
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| Q |
319 |
gtccaacagtatcatgcgtgtgtacattttcaacaaattgaaatcatcgatc |
370 |
Q |
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| T |
31015521 |
gtccaacagtatcatgcgtgtgtacattttcaacaaattgaaatcatcgatc |
31015572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 134 - 370
Target Start/End: Original strand, 31193496 - 31193726
Alignment:
| Q |
134 |
tacagtcaagttgagagaagcgagaatcatatacatatacttattcaatatcataacattaacataatagcatacatttttgctccaaattaaatccact |
233 |
Q |
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| T |
31193496 |
tacaatcaagttgaaagaagcgagaatcatctac------ttattcaatatcataacattaagataatagcatacatttttgctccaaattaaatccact |
31193589 |
T |
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| Q |
234 |
aggctgcatactgaaactattatagaacaattaagagctaacttaccatttcctggattttaacctaggccgaacagaaatcaccgtccaacagtatcat |
333 |
Q |
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| T |
31193590 |
aggctgcatacggaaactattatagaacaattaagacctaacttaccatttcctggattttaacctaggctgaacagaaatcaccgtccaacagtatcat |
31193689 |
T |
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| Q |
334 |
gcgtgtgtacattttcaacaaattgaaatcatcgatc |
370 |
Q |
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| T |
31193690 |
gcgtgtgtacattttcaacaaattgaaatcatcgatc |
31193726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 31193424 - 31193496
Alignment:
| Q |
19 |
ttgagttcagccaaactcaacccatacaaaatcgacttgtatggtgagtactgtctccacttataaacacatt |
91 |
Q |
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| T |
31193424 |
ttgagttcggccaaactcaacccatacaaaattgacttgtatggtgagaatcgtctccacttataaacacatt |
31193496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 22127044 - 22126962
Alignment:
| Q |
32 |
aactcaacccatacaaaatcgacttgtatggtgagtactgtct-ccacttataaacacattttccggcctgatctcattcaat |
113 |
Q |
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| T |
22127044 |
aactcaacccttacaaaatcggtttgtaaggtgaggactgcccaccacttataaacacattttcaggcctcatctcatccaat |
22126962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 37812300 - 37812348
Alignment:
| Q |
43 |
tacaaaatcgacttgtatggtgagtactgtctccacttataaacacatt |
91 |
Q |
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| T |
37812300 |
tacaaaatcgacttgtgaggtgaggattgtccccacttataaacacatt |
37812348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 55253369 - 55253325
Alignment:
| Q |
43 |
tacaaaatcgacttgtatggtgagtactgtctccacttataaaca |
87 |
Q |
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| T |
55253369 |
tacaaaaccgacttgtaaggtgaggactgtctctacttataaaca |
55253325 |
T |
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