View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20607_high_1 (Length: 651)
Name: NF20607_high_1
Description: NF20607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20607_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 582; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 18 - 623
Target Start/End: Complemental strand, 8253362 - 8252757
Alignment:
| Q |
18 |
atcagaaacaacaaaaggtagtgtattagcctttggaatattttttctacatgcagaggaagaagagctagagaaatccttggaagcccttttgatcttt |
117 |
Q |
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| T |
8253362 |
atcacaaacaacaaaaggtagtgtattagcctttggaatattttttctacatgcagaggaagaagagctagagaaatccttggaagcccttttgatcttt |
8253263 |
T |
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| Q |
118 |
tttgaaccaaaatcaccccatacatcttcttcattaaaatcttggtcttcttcaacaaaactagtgtttttgttcttgattacaccccaatctgccattg |
217 |
Q |
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| T |
8253262 |
tttgaaccaaaatcaccccatacatcttcttcatcaaaatcttggtcttcttcaacaaaactagtgtttttgttcttgattacaccccaatctgccattg |
8253163 |
T |
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| Q |
218 |
ctattgatgaagtgaaaagagagtggctatgaaaagacagaggagggtaataaagagattaattagctatgagtagtgatgacaatgtttcctatttcag |
317 |
Q |
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| T |
8253162 |
ctattgatgaagtgaaaagagagtggttatgaaaagatagaggagggtaataaagagattaattagctatgagtagtgatgacaatgtttcctatttcag |
8253063 |
T |
|
| Q |
318 |
catatatagacatagagaactgaaacttttccacctaatgacactgtggttttgtaatgagataaaatagatatctttttcccttgtccttgggaatcaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8253062 |
catatatagacatagagaactgaaacttttccacctaatgacactgtggttttgtaatgagataaaatagatatctttttcccttgtccttgggaatcaa |
8252963 |
T |
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| Q |
418 |
aaagcagaaaggttcaagagaataatatcaggaatctccctagcttttcttacaataccctataaatggaaaaattatatttattccaaaaattgaaatt |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8252962 |
aaagcagaaaggttcaagagaataatatcaggaatctccctagcttttcttacaataccctataaatggaaaaattatatttattccaaaaattgaaatt |
8252863 |
T |
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| Q |
518 |
ccttattgaattaccaactactatagccttggaaatccgagacaagactaatattgagaaaagacaaaattttgagtggtgatgggcaatgtagcaccaa |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
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| T |
8252862 |
ccttattgaattaccaactactatagccttggaaatccgagacaagactaatattgagaaaagacaaaattttgagtggtgatgggcaatgtagaaccga |
8252763 |
T |
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| Q |
618 |
tgtttt |
623 |
Q |
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|||||| |
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| T |
8252762 |
tgtttt |
8252757 |
T |
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