View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20607_high_3 (Length: 307)
Name: NF20607_high_3
Description: NF20607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20607_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 22 - 296
Target Start/End: Complemental strand, 1584744 - 1584471
Alignment:
| Q |
22 |
cctggtgattctgttgatgagcagaaacaaaagtttgcagcaaaaggccttaacactcaagaccttgtcacccttgttggtaagagatctaaatattttc |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1584744 |
cctggtgattctgttgatgagcagaaacaaaagtttgcaacaaaaggccttaacactcaagaccttgtcacccttgttggtaagagatctaaatattttc |
1584645 |
T |
|
| Q |
122 |
aaaatttatttaccactttagaattacatattgaagttgcattcacattaattaatattctatgaatatattataggtggacatacaattggtacaacag |
221 |
Q |
| |
|
||||||||||| |||| |||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1584644 |
gaaatttatttatcactctagaattacatattgatgttgcat-cacattaattaatattttatgaatatattataggtggacatacaattggtacaacag |
1584546 |
T |
|
| Q |
222 |
catgtcaattcttcagcaacagattgagaaacttcactacaaatggtgcagctgatccttcaatagacccttcat |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1584545 |
catgtcaattcttcagcaacagattgagaaacttcactacaaatggtgcagctgatccttcaatagacccttcat |
1584471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 99 - 296
Target Start/End: Original strand, 1593216 - 1593412
Alignment:
| Q |
99 |
tggtaagagatctaaatattttcaaaatttatttaccactttagaattacatattgaagttgcattcacattaattaatattctatgaatatattatagg |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
1593216 |
tggtaagagatctaaatattttcaaaatttatttatcactctagaattacatattgatgttgcat-cacattaattaatattttatgaatatattatagg |
1593314 |
T |
|
| Q |
199 |
tggacatacaattggtacaacagcatgtcaattcttcagcaacagattgagaaacttcactacaaatggtgcagctgatccttcaatagacccttcat |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1593315 |
tggacatacaattggtacaacagcatgtcaattcttcagcaacagattgagaaactttactacaaatggtgcagctgatccttcaatagacccttcat |
1593412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 26 - 105
Target Start/End: Original strand, 1592332 - 1592411
Alignment:
| Q |
26 |
gtgattctgttgatgagcagaaacaaaagtttgcagcaaaaggccttaacactcaagaccttgtcacccttgttggtaag |
105 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1592332 |
gtgattctgttgatgtgcagaaacaaaagtttgcagcaaaaggcctcaacactcaagaccttgtcacccttgttggtaag |
1592411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University