View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20607_high_4 (Length: 261)
Name: NF20607_high_4
Description: NF20607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20607_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 9 - 242
Target Start/End: Complemental strand, 27170149 - 27169914
Alignment:
| Q |
9 |
gttacaaagaaatgttacaatatgtatctattttttattttaaagacaatattttcattgattaagcaattggtacaaggtgtaccaaaactttacaata |
108 |
Q |
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| T |
27170149 |
gttacaaagaaatgttacaatatgtatctatcttttattttaaagacaatattttcattgattaagcaattggtacaaggtgtaccaaaactgtacaata |
27170050 |
T |
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| Q |
109 |
tgatgccataatactacatatacaa--cccatccatcaaattgcaatttgcagcaacagcnnnnnnnntcctgaattgtgctacacaattctctattaac |
206 |
Q |
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| T |
27170049 |
tgatgccataatactacatatacaacgcccatccatcaaactgcaatttgcagcaacagcaaaaaaaatcccgaattgtgccacacaattctctgttaac |
27169950 |
T |
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| Q |
207 |
atccaagcaatatattttcaacattattgtgactgc |
242 |
Q |
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| T |
27169949 |
atccaagcaatatattttcaacattattgtgactgc |
27169914 |
T |
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