View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20607_high_6 (Length: 237)
Name: NF20607_high_6
Description: NF20607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20607_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 32226245 - 32226466
Alignment:
| Q |
1 |
catactgaaataccctgcaaaaa-cacggtagaaactaaaatagtcatttacagttcaataccattaaggataacttaaaatctgatgaatatcataaca |
99 |
Q |
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| T |
32226245 |
catactgaaataccctgcaaaaaacacagtagaaactaaaatagtcatttacagttcaataccattaaggataacttaaaatctgatgaatatcataaca |
32226344 |
T |
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| Q |
100 |
acacttaattgcatcttattgtaaatagttcatgttgtgtattgaattagaaatttaaattctatagaagaatcgtcaccaagatgctttcaaaggcgta |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32226345 |
acacttaattgcatcttattgtaaatagttcatgttgtgtattgaattagaaatttaaattctatagaagaatcgtcaccaagatgctttcaaaggcgta |
32226444 |
T |
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| Q |
200 |
gaagaatctaaatggtaacaac |
221 |
Q |
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|||||||||||||||||||||| |
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| T |
32226445 |
gaagaatctaaatggtaacaac |
32226466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 1659961 - 1660181
Alignment:
| Q |
1 |
catactgaaataccctgcaaaaacacggtagaaactaaaatagtcatttacagttcaataccattaaggataacttaaaatctgatgaatatcataacaa |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
1659961 |
catactgaaatacctagcaaaaacacggtagaaactaaaatagtcatttacagttcaacaccattaaggataacttaaaatttgatgaatatcataacaa |
1660060 |
T |
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| Q |
101 |
cacttaattgcatcttattgtaaatagttcatgttgtgtattgaattagaaatttaaattctatagaagaatcgtcaccaagatgctttcaaaggcgtag |
200 |
Q |
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| T |
1660061 |
cacttaattgcatcttattgtaaatagttcatgttgtgtattgaattagaaatttaaattctatagaagaatcgtcaccaagatgctttcaaaggcgtag |
1660160 |
T |
|
| Q |
201 |
aagaatctaaatggtaacaac |
221 |
Q |
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||||||||||||||||||||| |
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| T |
1660161 |
aagaatctaaatggtaacaac |
1660181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 222
Target Start/End: Original strand, 55821401 - 55821454
Alignment:
| Q |
169 |
gaatcgtcaccaagatgctttcaaaggcgtagaagaatctaaatggtaacaact |
222 |
Q |
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| T |
55821401 |
gaatcgtcaccaagatgctttccaaggtgtagaagaacctatatggtaacaact |
55821454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 121 - 168
Target Start/End: Complemental strand, 26450856 - 26450809
Alignment:
| Q |
121 |
taaatagttcatgttgtgtattgaattagaaatttaaattctatagaa |
168 |
Q |
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|
| T |
26450856 |
taaatagttcctattgtgtattgaattagaaatttaaattctatagaa |
26450809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 168
Target Start/End: Original strand, 40980509 - 40980556
Alignment:
| Q |
121 |
taaatagttcatgttgtgtattgaattagaaatttaaattctatagaa |
168 |
Q |
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||||||| || | ||||||||||||||||||||||||||||||||||| |
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|
| T |
40980509 |
taaatagctcctattgtgtattgaattagaaatttaaattctatagaa |
40980556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 222
Target Start/End: Original strand, 19001353 - 19001406
Alignment:
| Q |
169 |
gaatcgtcaccaagatgctttcaaaggcgtagaagaatctaaatggtaacaact |
222 |
Q |
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|||||||||| ||||||||||| |||| ||||||||| ||| |||||||||||| |
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| T |
19001353 |
gaatcgtcactaagatgctttccaaggtgtagaagaacctatatggtaacaact |
19001406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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